RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 ZSCAN20P17040 1043 aaPredicted RBP16.74■□□□□ 0.27
LDLR-202ENST00000455727 CHRNA5P30532 468 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 KLK7P49862 253 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 HERVK_113P62684 666 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 WHAMMP3Q1A5X7 153 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 ZCWPW2Q504Y3 356 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 TEX35Q5T0J7 233 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 SYDE2Q5VT97 1194 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 CCDC65Q8IXS2 484 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 KIAA1024Q9UPX6 916 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 FHOD1Q9Y613 1164 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 PSMD14O00487 310 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 GDF11O95390 407 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 PLA2G4BP0C869 781 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 BMP3P12645 472 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 FKBP3Q00688 224 aaKnown RBP16.74■□□□□ 0.27
LDLR-202ENST00000455727 GRIPAP1Q4V328 841 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 FAM26FQ5R3K3 315 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 HAUS3Q68CZ6 603 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 ARHGAP27Q6ZUM4 889 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 EHBP1Q8NDI1 1231 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 ETNPPLQ8TBG4 499 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 GJA10Q969M2 543 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 PRMT6Q96LA8 375 aaPredicted RBP16.74■□□□□ 0.27
LDLR-202ENST00000455727 NHEJ1Q9H9Q4 299 aaPredicted RBP16.74■□□□□ 0.27
LDLR-202ENST00000455727 HERC5Q9UII4 1024 aaKnown RBP16.74■□□□□ 0.27
LDLR-202ENST00000455727 PLAGL2Q9UPG8 496 aa16.74■□□□□ 0.27
LDLR-202ENST00000455727 PITPNM2Q9BZ72 1349 aa16.73■□□□□ 0.27
LDLR-202ENST00000455727 SREBF1P36956 1147 aa16.73■□□□□ 0.27
LDLR-202ENST00000455727 EDEM3Q9BZQ6 932 aa16.73■□□□□ 0.27
LDLR-202ENST00000455727 PCDHA2Q9Y5H9 948 aa16.73■□□□□ 0.27
LDLR-202ENST00000455727 NKRFO15226 690 aaKnown RBP eCLIP16.73■□□□□ 0.27
LDLR-202ENST00000455727 KIF20AO95235 890 aa16.73■□□□□ 0.27
LDLR-202ENST00000455727 IPO7O95373 1038 aaKnown RBP16.73■□□□□ 0.27
LDLR-202ENST00000455727 GH2P01242 217 aa16.73■□□□□ 0.27
LDLR-202ENST00000455727 CIITAP33076 1130 aa16.73■□□□□ 0.27
LDLR-202ENST00000455727 AMPD2Q01433 879 aa16.73■□□□□ 0.27
LDLR-202ENST00000455727 SPIRE1Q08AE8 756 aa16.73■□□□□ 0.27
LDLR-202ENST00000455727 TRAF1Q13077 416 aa16.73■□□□□ 0.27
LDLR-202ENST00000455727 FAM20AQ96MK3 541 aa16.73■□□□□ 0.27
LDLR-202ENST00000455727 CEP63Q96MT8 703 aa16.73■□□□□ 0.27
LDLR-202ENST00000455727 P2RX7Q99572 595 aaKnown RBP16.73■□□□□ 0.27
LDLR-202ENST00000455727 PARD6BQ9BYG5 372 aa16.73■□□□□ 0.27
LDLR-202ENST00000455727 ZNF219Q9P2Y4 722 aaPredicted RBP16.73■□□□□ 0.27
LDLR-202ENST00000455727 FRMD3A2A2Y4 597 aa16.72■□□□□ 0.27
LDLR-202ENST00000455727 SPDYE3A6NKU9 549 aa16.72■□□□□ 0.27
LDLR-202ENST00000455727 E9PMD0 336 aa16.72■□□□□ 0.27
LDLR-202ENST00000455727 POTEB2H3BUK9 544 aa16.72■□□□□ 0.27
LDLR-202ENST00000455727 KRT86O43790 486 aa16.72■□□□□ 0.27
LDLR-202ENST00000455727 PNMA6AP0CW24 399 aaPredicted RBP16.72■□□□□ 0.27
LDLR-202ENST00000455727 GABPB1Q06547 395 aaPredicted RBP16.72■□□□□ 0.27
LDLR-202ENST00000455727 CSRNP1Q96S65 589 aa16.72■□□□□ 0.27
LDLR-202ENST00000455727 GUCA1BQ9UMX6 200 aa16.72■□□□□ 0.27
LDLR-202ENST00000455727 POTEB3A0JP26 581 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 POTECB2RU33 542 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 PIK3CDO00329 1044 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 GNA14O95837 355 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 CYP11B2P19099 503 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 JAG1P78504 1218 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 LRRC41Q15345 812 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 CCDC122Q5T0U0 273 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 POTEBQ6S5H4 581 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 GLIS3Q8NEA6 775 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 ERMNQ8TAM6 284 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 LENG9Q96B70 501 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 MYO6Q9UM54 1294 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 YDJCA8MPS7 323 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 SLC12A3P55017 1021 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 MARSP56192 900 aaKnown RBP16.71■□□□□ 0.27
LDLR-202ENST00000455727 CC2D1AQ6P1N0 951 aaPredicted RBP16.71■□□□□ 0.27
LDLR-202ENST00000455727 KIAA1328Q86T90 577 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 GPBP1Q86WP2 473 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 KCTD17Q8N5Z5 321 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 PRDM10Q9NQV6 1147 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 COL4A3BPQ9Y5P4 624 aa16.71■□□□□ 0.27
LDLR-202ENST00000455727 ATAD5Q96QE3 1844 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 CCDC151A5D8V7 595 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 PPIP5K2O43314 1243 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 MED24O75448 989 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 SSBP05455 408 aaKnown RBP eCLIP16.7■□□□□ 0.26
LDLR-202ENST00000455727 CYP3A4P08684 503 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 RPA1P27694 616 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 IKQ13123 557 aaPredicted RBP16.7■□□□□ 0.26
LDLR-202ENST00000455727 BRD3Q15059 726 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 PRR16Q569H4 304 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 EPC1Q9H2F5 836 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 PRDM4Q9UKN5 801 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 A0A1W2PRG0 241 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 RRP1BQ14684 758 aaKnown RBP16.7■□□□□ 0.26
LDLR-202ENST00000455727 SLC15A2Q16348 729 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 UTP14CQ5TAP6 766 aaKnown RBP16.7■□□□□ 0.26
LDLR-202ENST00000455727 TRAPPC11Q7Z392 1133 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 CATSPER3Q86XQ3 398 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 ZC3H3Q8IXZ2 948 aaKnown RBP16.7■□□□□ 0.26
LDLR-202ENST00000455727 MSANTD4Q8NCY6 345 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 JAKMIP2Q96AA8 810 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 CCDC42Q96M95 316 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 PURBQ96QR8 312 aaKnown RBP16.7■□□□□ 0.26
LDLR-202ENST00000455727 TMOD2Q9NZR1 351 aa16.7■□□□□ 0.26
LDLR-202ENST00000455727 TRIM10Q9UDY6 481 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms