RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 RNPC3Q96LT9 517 aaKnown RBP5.95□□□□□ -1.46
USP40-209ENST00000452724 KANSL2Q9H9L4 492 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 BTG4Q9NY30 223 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 MRPL42Q9Y6G3 142 aaKnown RBP5.95□□□□□ -1.46
USP40-209ENST00000452724 SMARCA5O60264 1052 aaPredicted RBP5.94□□□□□ -1.46
USP40-209ENST00000452724 PPP1R11O60927 126 aaPredicted RBP5.94□□□□□ -1.46
USP40-209ENST00000452724 PLA2G1BP04054 148 aaKnown RBP5.94□□□□□ -1.46
USP40-209ENST00000452724 CELA3BP08861 270 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 CYP2C8P10632 490 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 GTF2A2P52657 109 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 RPL11P62913 178 aaKnown RBP5.94□□□□□ -1.46
USP40-209ENST00000452724 SUMO1P63165 101 aaKnown RBP5.94□□□□□ -1.46
USP40-209ENST00000452724 SQSTM1Q13501 440 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 TESK1Q15569 626 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 MBLAC2Q68D91 279 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 GIMAP6Q6P9H5 292 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 USP53Q70EK8 1073 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 CCDC103Q8IW40 242 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 SMARCC2Q8TAQ2 1214 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 SEC14L1Q92503 715 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 DDX11Q96FC9 970 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 DHRS4Q9BTZ2 278 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 BCAS3Q9H6U6 928 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 NTMQ9P121 344 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 FBLN5Q9UBX5 448 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 TMEFF2Q9UIK5 374 aaPredicted RBP5.94□□□□□ -1.46
USP40-209ENST00000452724 PLA2G2DQ9UNK4 145 aa5.94□□□□□ -1.46
USP40-209ENST00000452724 MRPS23Q9Y3D9 190 aaKnown RBP5.94□□□□□ -1.46
USP40-209ENST00000452724 BLACEA4D250 179 aa5.93□□□□□ -1.46
USP40-209ENST00000452724 C22orf46C9J442 243 aa5.93□□□□□ -1.46
USP40-209ENST00000452724 ARNTLO00327 626 aa5.93□□□□□ -1.46
USP40-209ENST00000452724 LTBRP36941 435 aa5.93□□□□□ -1.46
USP40-209ENST00000452724 NTRK3Q16288 839 aa5.93□□□□□ -1.46
USP40-209ENST00000452724 INF2Q27J81 1249 aa5.93□□□□□ -1.46
USP40-209ENST00000452724 MROH9Q5TGP6 573 aa5.93□□□□□ -1.46
USP40-209ENST00000452724 ETV3LQ6ZN32 361 aa5.93□□□□□ -1.46
USP40-209ENST00000452724 ZC3H18Q86VM9 953 aaKnown RBP5.93□□□□□ -1.46
USP40-209ENST00000452724 PLEKHO2Q8TD55 490 aa5.93□□□□□ -1.46
USP40-209ENST00000452724 DIO2Q92813 273 aa5.93□□□□□ -1.46
USP40-209ENST00000452724 TBX22Q9Y458 520 aa5.93□□□□□ -1.46
USP40-209ENST00000452724 TIMM13Q9Y5L4 95 aaPredicted RBP5.93□□□□□ -1.46
USP40-209ENST00000452724 CCDC163A0A0D9SF12 145 aa5.92□□□□□ -1.46
USP40-209ENST00000452724 SLC6A11P48066 632 aa5.92□□□□□ -1.46
USP40-209ENST00000452724 GJA9P57773 515 aa5.92□□□□□ -1.46
USP40-209ENST00000452724 NT5DC1Q5TFE4 455 aa5.92□□□□□ -1.46
USP40-209ENST00000452724 CARFQ8N187 725 aa5.92□□□□□ -1.46
USP40-209ENST00000452724 ZNF526Q8TF50 670 aaPredicted RBP5.92□□□□□ -1.46
USP40-209ENST00000452724 DCAF4Q8WV16 495 aa5.92□□□□□ -1.46
USP40-209ENST00000452724 KISS1RQ969F8 398 aaPredicted RBP5.92□□□□□ -1.46
USP40-209ENST00000452724 SPATA25Q9BR10 227 aa5.92□□□□□ -1.46
USP40-209ENST00000452724 ADAM7Q9H2U9 754 aa5.92□□□□□ -1.46
USP40-209ENST00000452724 NGRNQ9NPE2 291 aaKnown RBP5.92□□□□□ -1.46
USP40-209ENST00000452724 TMEM260Q9NX78 707 aa5.92□□□□□ -1.46
USP40-209ENST00000452724 COA3Q9Y2R0 106 aaPredicted RBP5.92□□□□□ -1.46
USP40-209ENST00000452724 TMA7Q9Y2S6 64 aaKnown RBP5.92□□□□□ -1.46
USP40-209ENST00000452724 NPFFR2Q9Y5X5 522 aa5.92□□□□□ -1.46
USP40-209ENST00000452724 ESYT3A0FGR9 886 aa5.91□□□□□ -1.46
USP40-209ENST00000452724 TLDC2A0PJX2 215 aa5.91□□□□□ -1.46
USP40-209ENST00000452724 SARSP49591 514 aaKnown RBP5.91□□□□□ -1.46
USP40-209ENST00000452724 CHRNA2Q15822 529 aa5.91□□□□□ -1.46
USP40-209ENST00000452724 UBXN11Q5T124 520 aa5.91□□□□□ -1.46
USP40-209ENST00000452724 RIOX2Q8IUF8 465 aa5.91□□□□□ -1.46
USP40-209ENST00000452724 TEX2Q8IWB9 1127 aa5.91□□□□□ -1.46
USP40-209ENST00000452724 RCBTB1Q8NDN9 531 aa5.91□□□□□ -1.46
USP40-209ENST00000452724 ZBTB8AQ96BR9 441 aa5.91□□□□□ -1.46
USP40-209ENST00000452724 TRMT2BQ96GJ1 504 aaKnown RBP5.91□□□□□ -1.46
USP40-209ENST00000452724 YIPF4Q9BSR8 244 aa5.91□□□□□ -1.46
USP40-209ENST00000452724 PHF20Q9BVI0 1012 aa5.91□□□□□ -1.46
USP40-209ENST00000452724 GPR27Q9NS67 375 aa5.91□□□□□ -1.46
USP40-209ENST00000452724 SIT1Q9Y3P8 196 aa5.91□□□□□ -1.46
USP40-209ENST00000452724 A0A1B0GTL3 188 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 C6orf222P0C671 652 aaPredicted RBP5.9□□□□□ -1.46
USP40-209ENST00000452724 LCP1P13796 627 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 PLP2Q04941 152 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 ZFYVE27Q5T4F4 411 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 STYK1Q6J9G0 422 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 KCNT2Q6UVM3 1135 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 RSPO2Q6UXX9 243 aaPredicted RBP5.9□□□□□ -1.46
USP40-209ENST00000452724 CEP68Q76N32 757 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 PRRT2Q7Z6L0 340 aaPredicted RBP5.9□□□□□ -1.46
USP40-209ENST00000452724 HOMER1Q86YM7 354 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 ADGRG2Q8IZP9 1017 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 DPF3Q92784 378 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 BORCS6Q96GS4 357 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 TMEM169Q96HH4 297 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 FANCLQ9NW38 375 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 PCDHA2Q9Y5H9 948 aa5.9□□□□□ -1.46
USP40-209ENST00000452724 GABREP78334 506 aa5.89□□□□□ -1.47
USP40-209ENST00000452724 SKOR2Q2VWA4 1001 aaPredicted RBP5.89□□□□□ -1.47
USP40-209ENST00000452724 CD300LDQ6UXZ3 194 aa5.89□□□□□ -1.47
USP40-209ENST00000452724 MAMDC2Q7Z304 686 aaPredicted RBP5.89□□□□□ -1.47
USP40-209ENST00000452724 MILR1Q7Z6M3 343 aa5.89□□□□□ -1.47
USP40-209ENST00000452724 MIB1Q86YT6 1006 aa5.89□□□□□ -1.47
USP40-209ENST00000452724 LINC00482Q8N8I6 264 aa5.89□□□□□ -1.47
USP40-209ENST00000452724 APPBP2Q92624 585 aa5.89□□□□□ -1.47
USP40-209ENST00000452724 PTPRN2Q92932 1015 aa5.89□□□□□ -1.47
USP40-209ENST00000452724 ZFYVE21Q9BQ24 234 aa5.89□□□□□ -1.47
USP40-209ENST00000452724 BDH2Q9BUT1 245 aa5.89□□□□□ -1.47
USP40-209ENST00000452724 CNOT11Q9UKZ1 510 aaKnown RBP5.89□□□□□ -1.47
USP40-209ENST00000452724 SGSM2O43147 1006 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms