RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 UBA1P22314 1058 aaKnown RBP17.82■□□□□ 0.44
LIMS1-210ENST00000449684 SMAD3P84022 425 aaKnown RBP17.82■□□□□ 0.44
LIMS1-210ENST00000449684 APOBRQ0VD83 1088 aa17.82■□□□□ 0.44
LIMS1-210ENST00000449684 NEDD9Q14511 834 aa17.82■□□□□ 0.44
LIMS1-210ENST00000449684 ZNF697Q5TEC3 545 aa17.82■□□□□ 0.44
LIMS1-210ENST00000449684 MYSM1Q5VVJ2 828 aa17.82■□□□□ 0.44
LIMS1-210ENST00000449684 BRF1Q92994 677 aa17.82■□□□□ 0.44
LIMS1-210ENST00000449684 ALG1Q9BT22 464 aa17.82■□□□□ 0.44
LIMS1-210ENST00000449684 IL23AQ9NPF7 189 aa17.82■□□□□ 0.44
LIMS1-210ENST00000449684 V9GY48 417 aaPredicted RBP17.82■□□□□ 0.44
LIMS1-210ENST00000449684 MYH7BA7E2Y1 1941 aa17.82■□□□□ 0.44
LIMS1-210ENST00000449684 FRMPD4Q14CM0 1322 aa17.81■□□□□ 0.44
LIMS1-210ENST00000449684 UMODL1Q5DID0 1318 aa17.81■□□□□ 0.44
LIMS1-210ENST00000449684 CNTNAP5Q8WYK1 1306 aa17.81■□□□□ 0.44
LIMS1-210ENST00000449684 FGBP02675 491 aa17.81■□□□□ 0.44
LIMS1-210ENST00000449684 ZNF286BP0CG31 522 aa17.81■□□□□ 0.44
LIMS1-210ENST00000449684 RPS6KB1P23443 525 aa17.81■□□□□ 0.44
LIMS1-210ENST00000449684 PSEN2P49810 448 aa17.81■□□□□ 0.44
LIMS1-210ENST00000449684 RCAN1P53805 252 aa17.81■□□□□ 0.44
LIMS1-210ENST00000449684 MRPS9P82933 396 aaKnown RBP17.81■□□□□ 0.44
LIMS1-210ENST00000449684 UBE2SQ16763 222 aa17.81■□□□□ 0.44
LIMS1-210ENST00000449684 TMEM240Q5SV17 173 aa17.81■□□□□ 0.44
LIMS1-210ENST00000449684 PCNX4Q63HM2 1172 aa17.81■□□□□ 0.44
LIMS1-210ENST00000449684 ZNF365Q70YC5 407 aa17.81■□□□□ 0.44
LIMS1-210ENST00000449684 CCDC155Q8N6L0 562 aa17.81■□□□□ 0.44
LIMS1-210ENST00000449684 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.8■□□□□ 0.44
LIMS1-210ENST00000449684 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.8■□□□□ 0.44
LIMS1-210ENST00000449684 SPATA31C2B4DYI2 1134 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 EPB41L2O43491 1005 aaKnown RBP17.8■□□□□ 0.44
LIMS1-210ENST00000449684 ICAM3P32942 547 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 AKAP17AQ02040 695 aaKnown RBP17.8■□□□□ 0.44
LIMS1-210ENST00000449684 SP2Q02086 613 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 BFSP2Q13515 415 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 MFSD10Q14728 455 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 PTGISQ16647 500 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 KIAA0753Q2KHM9 967 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 HSDL1Q3SXM5 330 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 WWC2Q6AWC2 1192 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 SCLYQ96I15 445 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 FAM161BQ96MY7 647 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 INPP4AQ96PE3 977 aaPredicted RBP17.8■□□□□ 0.44
LIMS1-210ENST00000449684 PCDHA6Q9UN73 950 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 PCDHA8Q9Y5H6 950 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 SCN10AQ9Y5Y9 1956 aa17.8■□□□□ 0.44
LIMS1-210ENST00000449684 hCG_1984214I3L0E3 225 aa17.79■□□□□ 0.44
LIMS1-210ENST00000449684 CDC27P30260 824 aa17.79■□□□□ 0.44
LIMS1-210ENST00000449684 ADD1P35611 737 aaKnown RBP17.79■□□□□ 0.44
LIMS1-210ENST00000449684 ADCY7P51828 1080 aa17.79■□□□□ 0.44
LIMS1-210ENST00000449684 FAM109BQ6ICB4 259 aaPredicted RBP17.79■□□□□ 0.44
LIMS1-210ENST00000449684 PPP1R18Q6NYC8 613 aa17.79■□□□□ 0.44
LIMS1-210ENST00000449684 CYFIP1Q7L576 1253 aa17.79■□□□□ 0.44
LIMS1-210ENST00000449684 ZNF713Q8N859 430 aaPredicted RBP17.79■□□□□ 0.44
LIMS1-210ENST00000449684 GIMAP8Q8ND71 665 aaPredicted RBP17.79■□□□□ 0.44
LIMS1-210ENST00000449684 KAT2BQ92831 832 aa17.79■□□□□ 0.44
LIMS1-210ENST00000449684 CDHR1Q96JP9 859 aa17.79■□□□□ 0.44
LIMS1-210ENST00000449684 GLT8D2Q9H1C3 349 aa17.79■□□□□ 0.44
LIMS1-210ENST00000449684 SMCO2A6NFE2 343 aa17.78■□□□□ 0.44
LIMS1-210ENST00000449684 F2P00734 622 aa17.78■□□□□ 0.44
LIMS1-210ENST00000449684 SP4Q02446 784 aa17.78■□□□□ 0.44
LIMS1-210ENST00000449684 METTL7BQ6UX53 244 aa17.78■□□□□ 0.44
LIMS1-210ENST00000449684 C16orf59Q7L2K0 433 aa17.78■□□□□ 0.44
LIMS1-210ENST00000449684 OTOP2Q7RTS6 562 aa17.78■□□□□ 0.44
LIMS1-210ENST00000449684 DEFB128Q7Z7B8 93 aa17.78■□□□□ 0.44
LIMS1-210ENST00000449684 SESTD1Q86VW0 696 aa17.78■□□□□ 0.44
LIMS1-210ENST00000449684 WNT8AQ9H1J5 351 aa17.78■□□□□ 0.44
LIMS1-210ENST00000449684 MTMR10Q9NXD2 777 aa17.78■□□□□ 0.44
LIMS1-210ENST00000449684 HDAC6Q9UBN7 1215 aa17.78■□□□□ 0.44
LIMS1-210ENST00000449684 CYP46A1Q9Y6A2 500 aa17.78■□□□□ 0.44
LIMS1-210ENST00000449684 ZBBXA8MT70 800 aa17.77■□□□□ 0.44
LIMS1-210ENST00000449684 PITPNM1O00562 1244 aa17.77■□□□□ 0.44
LIMS1-210ENST00000449684 FOSP01100 380 aaPredicted RBP17.77■□□□□ 0.44
LIMS1-210ENST00000449684 FUT2Q10981 343 aa17.77■□□□□ 0.44
LIMS1-210ENST00000449684 GDF6Q6KF10 455 aaPredicted RBP17.77■□□□□ 0.44
LIMS1-210ENST00000449684 RUFY3Q7L099 469 aa17.77■□□□□ 0.44
LIMS1-210ENST00000449684 CAGE1Q8TC20 777 aa17.77■□□□□ 0.44
LIMS1-210ENST00000449684 GPRASP2Q96D09 838 aa17.77■□□□□ 0.44
LIMS1-210ENST00000449684 USP26Q9BXU7 913 aa17.77■□□□□ 0.44
LIMS1-210ENST00000449684 FTOQ9C0B1 505 aaKnown RBP eCLIP17.77■□□□□ 0.44
LIMS1-210ENST00000449684 RIC8AQ9NPQ8 531 aa17.77■□□□□ 0.44
LIMS1-210ENST00000449684 FAM217BQ9NTX9 383 aaPredicted RBP17.77■□□□□ 0.44
LIMS1-210ENST00000449684 BARHL2Q9NY43 387 aa17.77■□□□□ 0.44
LIMS1-210ENST00000449684 GTF2IRD1Q9UHL9 959 aa17.77■□□□□ 0.44
LIMS1-210ENST00000449684 STXBP3O00186 592 aa17.76■□□□□ 0.43
LIMS1-210ENST00000449684 PFKMP08237 780 aa17.76■□□□□ 0.43
LIMS1-210ENST00000449684 ACTN1P12814 892 aa17.76■□□□□ 0.43
LIMS1-210ENST00000449684 RFC2P35250 354 aa17.76■□□□□ 0.43
LIMS1-210ENST00000449684 MTMR1Q13613 665 aa17.76■□□□□ 0.43
LIMS1-210ENST00000449684 TEX2Q8IWB9 1127 aa17.76■□□□□ 0.43
LIMS1-210ENST00000449684 CCDC12Q8WUD4 166 aaPredicted RBP17.76■□□□□ 0.43
LIMS1-210ENST00000449684 HERVK_113Q902F9 699 aa17.76■□□□□ 0.43
LIMS1-210ENST00000449684 SENP7Q9BQF6 1050 aa17.76■□□□□ 0.43
LIMS1-210ENST00000449684 H3BRB1 525 aa17.75■□□□□ 0.43
LIMS1-210ENST00000449684 HAS3O00219 553 aa17.75■□□□□ 0.43
LIMS1-210ENST00000449684 LGALS2P05162 132 aa17.75■□□□□ 0.43
LIMS1-210ENST00000449684 IQCF3P0C7M6 154 aa17.75■□□□□ 0.43
LIMS1-210ENST00000449684 HOXD8P13378 290 aaPredicted RBP17.75■□□□□ 0.43
LIMS1-210ENST00000449684 SCG2P13521 617 aa17.75■□□□□ 0.43
LIMS1-210ENST00000449684 ZNF76P36508 570 aa17.75■□□□□ 0.43
LIMS1-210ENST00000449684 SEMA3FQ13275 785 aa17.75■□□□□ 0.43
LIMS1-210ENST00000449684 PFKFB3Q16875 520 aaPredicted RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms