RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 NSMFQ6X4W1 530 aa7.11□□□□□ -1.27
VPS50-206ENST00000443443 MIB1Q86YT6 1006 aa7.11□□□□□ -1.27
VPS50-206ENST00000443443 Q8N1Y9 231 aa7.11□□□□□ -1.27
VPS50-206ENST00000443443 C11orf84Q9BUA3 381 aaPredicted RBP7.11□□□□□ -1.27
VPS50-206ENST00000443443 PHF20Q9BVI0 1012 aa7.11□□□□□ -1.27
VPS50-206ENST00000443443 EIF5BO60841 1220 aaKnown RBP7.1□□□□□ -1.27
VPS50-206ENST00000443443 BUD31P41223 144 aaPredicted RBP7.1□□□□□ -1.27
VPS50-206ENST00000443443 LCE5AQ5TCM9 118 aa7.1□□□□□ -1.27
VPS50-206ENST00000443443 FRMD5Q7Z6J6 570 aa7.1□□□□□ -1.27
VPS50-206ENST00000443443 FAM126BQ8IXS8 530 aa7.1□□□□□ -1.27
VPS50-206ENST00000443443 LRRC47Q8N1G4 583 aaKnown RBP7.1□□□□□ -1.27
VPS50-206ENST00000443443 KYQ8NBH2 561 aa7.1□□□□□ -1.27
VPS50-206ENST00000443443 ST13P5Q8NFI4 369 aaPredicted RBP7.1□□□□□ -1.27
VPS50-206ENST00000443443 DDX1Q92499 740 aaKnown RBP7.1□□□□□ -1.27
VPS50-206ENST00000443443 EPB41L1Q9H4G0 881 aa7.1□□□□□ -1.27
VPS50-206ENST00000443443 NGRNQ9NPE2 291 aaKnown RBP7.1□□□□□ -1.27
VPS50-206ENST00000443443 GPR27Q9NS67 375 aa7.1□□□□□ -1.27
VPS50-206ENST00000443443 PCDHB4Q9Y5E5 795 aa7.1□□□□□ -1.27
VPS50-206ENST00000443443 NPFFR2Q9Y5X5 522 aa7.1□□□□□ -1.27
VPS50-206ENST00000443443 TRAV20A0A0B4J274 112 aa7.09□□□□□ -1.27
VPS50-206ENST00000443443 PABPC1P11940 636 aaKnown RBP7.09□□□□□ -1.27
VPS50-206ENST00000443443 DLX2Q07687 328 aaPredicted RBP7.09□□□□□ -1.27
VPS50-206ENST00000443443 UBXN11Q5T124 520 aa7.09□□□□□ -1.27
VPS50-206ENST00000443443 TTLL6Q8N841 843 aa7.09□□□□□ -1.27
VPS50-206ENST00000443443 LINC00482Q8N8I6 264 aa7.09□□□□□ -1.27
VPS50-206ENST00000443443 ARRDC4Q8NCT1 418 aa7.09□□□□□ -1.27
VPS50-206ENST00000443443 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.09□□□□□ -1.27
VPS50-206ENST00000443443 DCAF4Q8WV16 495 aa7.09□□□□□ -1.27
VPS50-206ENST00000443443 TEPSINQ96N21 525 aa7.09□□□□□ -1.27
VPS50-206ENST00000443443 KRTAP4-5Q9BYR2 181 aa7.09□□□□□ -1.27
VPS50-206ENST00000443443 ARHGEF4Q9NR80 690 aa7.09□□□□□ -1.27
VPS50-206ENST00000443443 ZNF652Q9Y2D9 606 aa7.09□□□□□ -1.27
VPS50-206ENST00000443443 SHROOM4Q9ULL8 1493 aa7.09□□□□□ -1.27
VPS50-206ENST00000443443 BLACEA4D250 179 aa7.08□□□□□ -1.28
VPS50-206ENST00000443443 KRIT1O00522 736 aa7.08□□□□□ -1.28
VPS50-206ENST00000443443 MAFKO60675 156 aa7.08□□□□□ -1.28
VPS50-206ENST00000443443 MSCO60682 206 aa7.08□□□□□ -1.28
VPS50-206ENST00000443443 GTF2F1P35269 517 aaKnown RBP eCLIP7.08□□□□□ -1.28
VPS50-206ENST00000443443 GJA9P57773 515 aa7.08□□□□□ -1.28
VPS50-206ENST00000443443 IFRD2Q12894 506 aaPredicted RBP7.08□□□□□ -1.28
VPS50-206ENST00000443443 KCNT2Q6UVM3 1135 aa7.08□□□□□ -1.28
VPS50-206ENST00000443443 FERMT3Q86UX7 667 aa7.08□□□□□ -1.28
VPS50-206ENST00000443443 CXorf38Q8TB03 319 aa7.08□□□□□ -1.28
VPS50-206ENST00000443443 OSBP2Q969R2 916 aa7.08□□□□□ -1.28
VPS50-206ENST00000443443 TOE1Q96GM8 510 aaKnown RBP7.08□□□□□ -1.28
VPS50-206ENST00000443443 KCNJ15Q99712 375 aa7.08□□□□□ -1.28
VPS50-206ENST00000443443 LOC105371045A0A1W2PR82 267 aa7.07□□□□□ -1.28
VPS50-206ENST00000443443 TCRBV5S2A0A599 114 aa7.07□□□□□ -1.28
VPS50-206ENST00000443443 TADA3O75528 432 aa7.07□□□□□ -1.28
VPS50-206ENST00000443443 CELA3BP08861 270 aa7.07□□□□□ -1.28
VPS50-206ENST00000443443 HMGB1P09429 215 aaKnown RBP7.07□□□□□ -1.28
VPS50-206ENST00000443443 FGFR1P11362 822 aa7.07□□□□□ -1.28
VPS50-206ENST00000443443 PLP2Q04941 152 aa7.07□□□□□ -1.28
VPS50-206ENST00000443443 YOD1Q5VVQ6 348 aaPredicted RBP7.07□□□□□ -1.28
VPS50-206ENST00000443443 RSPO2Q6UXX9 243 aaPredicted RBP7.07□□□□□ -1.28
VPS50-206ENST00000443443 IPO9Q96P70 1041 aaKnown RBP7.07□□□□□ -1.28
VPS50-206ENST00000443443 KRTAP9-3Q9BYQ3 159 aa7.07□□□□□ -1.28
VPS50-206ENST00000443443 MYOTQ9UBF9 498 aa7.07□□□□□ -1.28
VPS50-206ENST00000443443 PPARGC1AQ9UBK2 798 aaKnown RBP7.07□□□□□ -1.28
VPS50-206ENST00000443443 PFDN2Q9UHV9 154 aa7.07□□□□□ -1.28
VPS50-206ENST00000443443 DDX3XO00571 662 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS50-206ENST00000443443 PDPK1O15530 556 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 PRICKLE3O43900 615 aaPredicted RBP7.06□□□□□ -1.28
VPS50-206ENST00000443443 COL6A2P12110 1019 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 RPL13P26373 211 aaKnown RBP7.06□□□□□ -1.28
VPS50-206ENST00000443443 THBS2P35442 1172 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 ITGA1P56199 1179 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 CR1LQ2VPA4 569 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 MTERF2Q49AM1 385 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 MCTP2Q6DN12 878 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 SPATC1Q76KD6 591 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 ZNF761Q86XN6 746 aaPredicted RBP7.06□□□□□ -1.28
VPS50-206ENST00000443443 PIP4K2CQ8TBX8 421 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 ADAMTS17Q8TE56 1095 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 CDC6Q99741 560 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 BDH2Q9BUT1 245 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 SPATA9Q9BWV2 254 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 SMOC1Q9H4F8 434 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 DTLQ9NZJ0 730 aa7.06□□□□□ -1.28
VPS50-206ENST00000443443 SLC27A2O14975 620 aa7.05□□□□□ -1.28
VPS50-206ENST00000443443 NOBOXO60393 691 aa7.05□□□□□ -1.28
VPS50-206ENST00000443443 RTP5Q14D33 572 aa7.05□□□□□ -1.28
VPS50-206ENST00000443443 RGL3Q3MIN7 710 aa7.05□□□□□ -1.28
VPS50-206ENST00000443443 EMC4Q5J8M3 183 aa7.05□□□□□ -1.28
VPS50-206ENST00000443443 PRAMEF18Q5VWM3 479 aa7.05□□□□□ -1.28
VPS50-206ENST00000443443 LBX2Q6XYB7 198 aa7.05□□□□□ -1.28
VPS50-206ENST00000443443 IFNL3Q8IZI9 196 aa7.05□□□□□ -1.28
VPS50-206ENST00000443443 CDIP1Q9H305 208 aa7.05□□□□□ -1.28
VPS50-206ENST00000443443 SLC6A20Q9NP91 592 aa7.05□□□□□ -1.28
VPS50-206ENST00000443443 GNAT1P11488 350 aa7.04□□□□□ -1.28
VPS50-206ENST00000443443 CNR2P34972 360 aa7.04□□□□□ -1.28
VPS50-206ENST00000443443 GRIN1Q05586 938 aa7.04□□□□□ -1.28
VPS50-206ENST00000443443 SPIRE1Q08AE8 756 aa7.04□□□□□ -1.28
VPS50-206ENST00000443443 NTRK3Q16288 839 aa7.04□□□□□ -1.28
VPS50-206ENST00000443443 KIZQ2M2Z5 673 aa7.04□□□□□ -1.28
VPS50-206ENST00000443443 TEPPQ6URK8 271 aa7.04□□□□□ -1.28
VPS50-206ENST00000443443 DPH6Q7L8W6 267 aa7.04□□□□□ -1.28
VPS50-206ENST00000443443 TRIM48Q8IWZ4 208 aa7.04□□□□□ -1.28
VPS50-206ENST00000443443 RBM12BQ8IXT5 1001 aaKnown RBP7.04□□□□□ -1.28
VPS50-206ENST00000443443 PHOSPHO1Q8TCT1 267 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms