RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 BMP3P12645 472 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 KRT33BQ14525 404 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 SYDE2Q5VT97 1194 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 TRIML1Q8N9V2 468 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 FGD4Q96M96 766 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 UBE2TQ9NPD8 197 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-206ENST00000429895 ZBTB1Q9Y2K1 713 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 YEATS2Q9ULM3 1422 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 SOS2Q07890 1332 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-206ENST00000429895 ARL4AP40617 200 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 BASP1P80723 227 aaKnown RBP16.7■□□□□ 0.26
PTPRF-206ENST00000429895 CYP4F22Q6NT55 531 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 GRAMD1CQ8IYS0 662 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 SIX6OS1Q8N1H7 587 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 DYNLL2Q96FJ2 89 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 HEXIM2Q96MH2 286 aaKnown RBP16.7■□□□□ 0.26
PTPRF-206ENST00000429895 JPH2Q9BR39 696 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-206ENST00000429895 SUDS3Q9H7L9 328 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-206ENST00000429895 STMN1P16949 149 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 TMED2Q15363 201 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 TRIP13Q15645 432 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-206ENST00000429895 GFPT2O94808 682 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 RXRBP28702 533 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 ZMYM4Q5VZL5 1548 aa16.7■□□□□ 0.26
PTPRF-206ENST00000429895 MCF2LO15068 1137 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 GSTA4O15217 222 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 UBE3CQ15386 1083 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 CXorf38Q8TB03 319 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 INPP5FQ9Y2H2 1132 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 PHEXP78562 749 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 SGO2Q562F6 1265 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 MOSPD1Q9UJG1 213 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 USH1CQ9Y6N9 552 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 FMNL1O95466 1100 aaPredicted RBP16.69■□□□□ 0.26
PTPRF-206ENST00000429895 GAP43P17677 238 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 HOXA13P31271 388 aaPredicted RBP16.69■□□□□ 0.26
PTPRF-206ENST00000429895 HAUS4Q9H6D7 363 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 G3BP2Q9UN86 482 aaKnown RBP16.69■□□□□ 0.26
PTPRF-206ENST00000429895 SOX5P35711 763 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 USP17L2Q6R6M4 530 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 FAM133AQ8N9E0 248 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 SLITRK6Q9H5Y7 841 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 ZNF215Q9UL58 517 aaPredicted RBP16.69■□□□□ 0.26
PTPRF-206ENST00000429895 GOLGA8IPA6NC78 632 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 GOLGA8JA6NMD2 632 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 NKX1-1Q15270 411 aaPredicted RBP16.69■□□□□ 0.26
PTPRF-206ENST00000429895 CC2D2BQ6DHV5 1058 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 DNAJC24Q6P3W2 148 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 EXOC8Q8IYI6 725 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 GCNAQ96QF7 691 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 ZBED2Q9BTP6 218 aa16.69■□□□□ 0.26
PTPRF-206ENST00000429895 FAM49AQ9H0Q0 323 aaPredicted RBP16.69■□□□□ 0.26
PTPRF-206ENST00000429895 HIP1RO75146 1068 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 CLTAP09496 248 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 ELF1P32519 619 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 SLC17A8Q8NDX2 589 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 KIAA0232Q92628 1395 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 EFCAB8A8MWE9 144 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 DSTYKQ6XUX3 929 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 LRRC8AQ8IWT6 810 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 RNF139Q8WU17 664 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 NLRP4Q96MN2 994 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 ATP8B3O60423 1300 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 USP17L8P0C7I0 530 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 PER1O15534 1290 aaPredicted RBP16.68■□□□□ 0.26
PTPRF-206ENST00000429895 ZMYND10O75800 440 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 RBL2Q08999 1139 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 MYO1EQ12965 1108 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 CHAMP1Q96JM3 812 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 Q9H521 79 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 CDO1Q16878 200 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 LCORLQ8N3X6 602 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 EXT2Q93063 718 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 MTRQ99707 1265 aa16.68■□□□□ 0.26
PTPRF-206ENST00000429895 LMNB2Q03252 620 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 MLH3Q9UHC1 1453 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 MED7O43513 233 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 CDC25AP30304 524 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 ZKSCAN8Q15776 578 aaPredicted RBP16.67■□□□□ 0.26
PTPRF-206ENST00000429895 ANTXR1Q9H6X2 564 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 ZNF18P17022 549 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 MSH2P43246 934 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 TTC1Q99614 292 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 KANSL2Q9H9L4 492 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 GCNT4Q9P109 453 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 CYP2D7A0A087X1C5 515 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 TOM1L1O75674 476 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 PKP1Q13835 747 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 STAG1Q8WVM7 1258 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 P2RX5Q93086 422 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.67■□□□□ 0.26
PTPRF-206ENST00000429895 PPWD1Q96BP3 646 aaKnown RBP16.67■□□□□ 0.26
PTPRF-206ENST00000429895 WDR11Q9BZH6 1224 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 ATP10AO60312 1499 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 EIF2AK2P19525 551 aaKnown RBP16.67■□□□□ 0.26
PTPRF-206ENST00000429895 SPOPLQ6IQ16 392 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 TRIM11Q96F44 468 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 TBK1Q9UHD2 729 aa16.67■□□□□ 0.26
PTPRF-206ENST00000429895 ZNF233A6NK53 670 aa16.66■□□□□ 0.26
PTPRF-206ENST00000429895 KRT10P13645 584 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms