RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 RBAK-RBAKDNI3L0D1 243 aa16.81■□□□□ 0.28
SDC1-204ENST00000429035 TNFRSF10AO00220 468 aa16.81■□□□□ 0.28
SDC1-204ENST00000429035 ARHGEF15O94989 841 aa16.81■□□□□ 0.28
SDC1-204ENST00000429035 CKBP12277 381 aa16.81■□□□□ 0.28
SDC1-204ENST00000429035 UBA1P22314 1058 aaKnown RBP16.81■□□□□ 0.28
SDC1-204ENST00000429035 CHMLP26374 656 aa16.81■□□□□ 0.28
SDC1-204ENST00000429035 WDR5P61964 334 aaKnown RBP16.81■□□□□ 0.28
SDC1-204ENST00000429035 MRPS5P82675 430 aaKnown RBP16.81■□□□□ 0.28
SDC1-204ENST00000429035 TMCO2Q7Z6W1 182 aaPredicted RBP16.81■□□□□ 0.28
SDC1-204ENST00000429035 CATIPQ7Z7H3 387 aa16.81■□□□□ 0.28
SDC1-204ENST00000429035 PHOSPHO2Q8TCD6 241 aa16.81■□□□□ 0.28
SDC1-204ENST00000429035 ADAMTS19Q8TE59 1207 aa16.81■□□□□ 0.28
SDC1-204ENST00000429035 EMID1Q96A84 441 aaPredicted RBP16.81■□□□□ 0.28
SDC1-204ENST00000429035 ASB2Q96Q27 587 aa16.81■□□□□ 0.28
SDC1-204ENST00000429035 ZBED2Q9BTP6 218 aa16.81■□□□□ 0.28
SDC1-204ENST00000429035 EPOPA6NHQ4 379 aa16.8■□□□□ 0.28
SDC1-204ENST00000429035 E7EWF7 191 aa16.8■□□□□ 0.28
SDC1-204ENST00000429035 DEFB103AP81534 67 aa16.8■□□□□ 0.28
SDC1-204ENST00000429035 ZNF200P98182 395 aaPredicted RBP16.8■□□□□ 0.28
SDC1-204ENST00000429035 TRAF1Q13077 416 aa16.8■□□□□ 0.28
SDC1-204ENST00000429035 SLC35G1Q2M3R5 365 aa16.8■□□□□ 0.28
SDC1-204ENST00000429035 CNKSR3Q6P9H4 555 aa16.8■□□□□ 0.28
SDC1-204ENST00000429035 STOX1Q6ZVD7 989 aa16.8■□□□□ 0.28
SDC1-204ENST00000429035 GPKOWQ92917 476 aaPredicted RBP eCLIP16.8■□□□□ 0.28
SDC1-204ENST00000429035 CTAGE1Q96RT6 745 aa16.8■□□□□ 0.28
SDC1-204ENST00000429035 MLXIPQ9HAP2 919 aa16.8■□□□□ 0.28
SDC1-204ENST00000429035 SIP14410 1827 aa16.8■□□□□ 0.28
SDC1-204ENST00000429035 KAT6AQ92794 2004 aa16.79■□□□□ 0.28
SDC1-204ENST00000429035 NOP56O00567 594 aaKnown RBP16.79■□□□□ 0.28
SDC1-204ENST00000429035 CYTH3O43739 400 aa16.79■□□□□ 0.28
SDC1-204ENST00000429035 RGS20O76081 388 aa16.79■□□□□ 0.28
SDC1-204ENST00000429035 GHRHRQ02643 423 aa16.79■□□□□ 0.28
SDC1-204ENST00000429035 TAP1Q03518 808 aa16.79■□□□□ 0.28
SDC1-204ENST00000429035 HSDL1Q3SXM5 330 aa16.79■□□□□ 0.28
SDC1-204ENST00000429035 CELF3Q5SZQ8 465 aaKnown RBP16.79■□□□□ 0.28
SDC1-204ENST00000429035 KRT40Q6A162 431 aa16.79■□□□□ 0.28
SDC1-204ENST00000429035 FAM117BQ6P1L5 589 aa16.79■□□□□ 0.28
SDC1-204ENST00000429035 KCNV1Q6PIU1 500 aa16.79■□□□□ 0.28
SDC1-204ENST00000429035 WNT8BQ93098 351 aa16.79■□□□□ 0.28
SDC1-204ENST00000429035 UHRF1Q96T88 793 aaPredicted RBP16.79■□□□□ 0.28
SDC1-204ENST00000429035 MYL10Q9BUA6 226 aa16.79■□□□□ 0.28
SDC1-204ENST00000429035 RIOX1Q9H6W3 641 aa16.79■□□□□ 0.28
SDC1-204ENST00000429035 MAP3K20Q9NYL2 800 aaKnown RBP16.79■□□□□ 0.28
SDC1-204ENST00000429035 PNMA6FA0A0J9YX94 578 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 LCHNA4D1U4 455 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 HAS3O00219 553 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 NBNO60934 754 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 SP4Q02446 784 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 PTK7Q13308 1070 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 GNPTABQ3T906 1256 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 ZNF618Q5T7W0 954 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 MYSM1Q5VVJ2 828 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 SPRED2Q7Z698 418 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 VSIG10LQ86VR7 867 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 SAMD3Q8N6K7 520 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 CTCFLQ8NI51 663 aaPredicted RBP16.78■□□□□ 0.28
SDC1-204ENST00000429035 GDPD5Q8WTR4 605 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 MTUS1Q9ULD2 1270 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 RBM8AQ9Y5S9 174 aaKnown RBP16.78■□□□□ 0.28
SDC1-204ENST00000429035 MTCH2Q9Y6C9 303 aa16.78■□□□□ 0.28
SDC1-204ENST00000429035 SGSM2O43147 1006 aa16.77■□□□□ 0.28
SDC1-204ENST00000429035 PARNO95453 639 aaKnown RBP16.77■□□□□ 0.28
SDC1-204ENST00000429035 THPOP40225 353 aa16.77■□□□□ 0.28
SDC1-204ENST00000429035 SP2Q02086 613 aa16.77■□□□□ 0.28
SDC1-204ENST00000429035 TFF2Q03403 129 aa16.77■□□□□ 0.28
SDC1-204ENST00000429035 RBL2Q08999 1139 aa16.77■□□□□ 0.28
SDC1-204ENST00000429035 TCTN1Q2MV58 587 aa16.77■□□□□ 0.28
SDC1-204ENST00000429035 CASC1Q6TDU7 716 aa16.77■□□□□ 0.28
SDC1-204ENST00000429035 NFXL1Q6ZNB6 911 aa16.77■□□□□ 0.28
SDC1-204ENST00000429035 SMARCC2Q8TAQ2 1214 aa16.77■□□□□ 0.28
SDC1-204ENST00000429035 SEC63Q9UGP8 760 aaKnown RBP16.77■□□□□ 0.28
SDC1-204ENST00000429035 C17orf102A2RUQ5 167 aa16.76■□□□□ 0.27
SDC1-204ENST00000429035 LGALS2P05162 132 aa16.76■□□□□ 0.27
SDC1-204ENST00000429035 ANTXR2P58335 489 aa16.76■□□□□ 0.27
SDC1-204ENST00000429035 TROAPQ12815 778 aa16.76■□□□□ 0.27
SDC1-204ENST00000429035 GPNMBQ14956 572 aa16.76■□□□□ 0.27
SDC1-204ENST00000429035 MB21D2Q8IYB1 491 aaPredicted RBP16.76■□□□□ 0.27
SDC1-204ENST00000429035 ZNF654Q8IZM8 581 aa16.76■□□□□ 0.27
SDC1-204ENST00000429035 CUL5Q93034 780 aa16.76■□□□□ 0.27
SDC1-204ENST00000429035 ATP6V0A1Q93050 837 aa16.76■□□□□ 0.27
SDC1-204ENST00000429035 NECAB3Q96P71 396 aaPredicted RBP16.76■□□□□ 0.27
SDC1-204ENST00000429035 RTEL1Q9NZ71 1219 aa16.76■□□□□ 0.27
SDC1-204ENST00000429035 PPFIA4O75335 1185 aa16.75■□□□□ 0.27
SDC1-204ENST00000429035 CXCL10P02778 98 aa16.75■□□□□ 0.27
SDC1-204ENST00000429035 CTSHP09668 335 aa16.75■□□□□ 0.27
SDC1-204ENST00000429035 HOXD8P13378 290 aaPredicted RBP16.75■□□□□ 0.27
SDC1-204ENST00000429035 GRB10Q13322 594 aa16.75■□□□□ 0.27
SDC1-204ENST00000429035 IKBKEQ14164 716 aa16.75■□□□□ 0.27
SDC1-204ENST00000429035 HIC1Q14526 733 aa16.75■□□□□ 0.27
SDC1-204ENST00000429035 TRIM71Q2Q1W2 868 aaKnown RBP16.75■□□□□ 0.27
SDC1-204ENST00000429035 UTP14CQ5TAP6 766 aaKnown RBP16.75■□□□□ 0.27
SDC1-204ENST00000429035 RAB11FIP4Q86YS3 637 aa16.75■□□□□ 0.27
SDC1-204ENST00000429035 RRP36Q96EU6 259 aaKnown RBP16.75■□□□□ 0.27
SDC1-204ENST00000429035 ABHD14A-ACY1A0A1B0GW23 586 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 CCDC69A6NI79 296 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 H3BRB1 525 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 PRC1O43663 620 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 EFCAB14O75071 495 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 LGR5O75473 907 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 DDAH1O94760 285 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms