RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 C1orf112Q9NSG2 853 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.74■□□□□ 0.11
PTPRU-204ENST00000428026 NARFQ9UHQ1 456 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 WDR91A4D1P6 747 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 EVI5O60447 810 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 DKC1O60832 514 aaKnown RBP eCLIP15.74■□□□□ 0.114e-7■■■■■ 29.5
PTPRU-204ENST00000428026 DCAF15Q66K64 600 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 TMC4Q7Z404 712 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 LINC00301Q8NCQ3 95 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 AP1M1Q9BXS5 423 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 POLR3EQ9NVU0 708 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 PGRMC1O00264 195 aaKnown RBP15.74■□□□□ 0.11
PTPRU-204ENST00000428026 CDC25AP30304 524 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 LONP1P36776 959 aaKnown RBP15.74■□□□□ 0.11
PTPRU-204ENST00000428026 MAGEA9P43362 315 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 CACNB1Q02641 598 aaPredicted RBP15.74■□□□□ 0.11
PTPRU-204ENST00000428026 KIF22Q14807 665 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 THOC1Q96FV9 657 aaKnown RBP15.74■□□□□ 0.11
PTPRU-204ENST00000428026 PSTPIP2Q9H939 334 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 NHEJ1Q9H9Q4 299 aaPredicted RBP15.74■□□□□ 0.11
PTPRU-204ENST00000428026 PIM2Q9P1W9 311 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 DDX25Q9UHL0 483 aaKnown RBP15.74■□□□□ 0.11
PTPRU-204ENST00000428026 ABCA6Q8N139 1617 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 CUL4BQ13620 913 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 TRIP13Q15645 432 aaPredicted RBP15.74■□□□□ 0.11
PTPRU-204ENST00000428026 ATP8A2Q9NTI2 1148 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 NFU1Q9UMS0 254 aa15.74■□□□□ 0.11
PTPRU-204ENST00000428026 SGK1O00141 431 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 ICE2Q659A1 982 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 CLEC4GQ6UXB4 293 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 LRRC47Q8N1G4 583 aaKnown RBP15.73■□□□□ 0.11
PTPRU-204ENST00000428026 FAM133AQ8N9E0 248 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 PIP4K2CQ8TBX8 421 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 ZCCHC17Q9NP64 241 aaKnown RBP15.73■□□□□ 0.11
PTPRU-204ENST00000428026 KLRF2D3W0D1 207 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 ASPHQ12797 758 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 TMTC3Q6ZXV5 915 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 TADA2BQ86TJ2 420 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 CDAN1Q8IWY9 1227 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 PPWD1Q96BP3 646 aaKnown RBP15.73■□□□□ 0.11
PTPRU-204ENST00000428026 MASTLQ96GX5 879 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 LRGUKQ96M69 825 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 ACTR5Q9H9F9 607 aaPredicted RBP15.73■□□□□ 0.11
PTPRU-204ENST00000428026 EIF3CLB5ME19 914 aaKnown RBP15.73■□□□□ 0.11
PTPRU-204ENST00000428026 EIF4A3P38919 411 aaKnown RBP15.73■□□□□ 0.11
PTPRU-204ENST00000428026 MMS22LQ6ZRQ5 1243 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 BBOF1Q8ND07 529 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 EIF3CQ99613 913 aaKnown RBP15.73■□□□□ 0.11
PTPRU-204ENST00000428026 GRAPQ13588 217 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.73■□□□□ 0.11
PTPRU-204ENST00000428026 GRAPLQ8TC17 118 aaPredicted RBP15.73■□□□□ 0.11
PTPRU-204ENST00000428026 EPC1Q9H2F5 836 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 WDR46O15213 610 aaKnown RBP15.73■□□□□ 0.11
PTPRU-204ENST00000428026 NDUFA10O95299 355 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 TRIM50Q86XT4 487 aa15.73■□□□□ 0.11
PTPRU-204ENST00000428026 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.73■□□□□ 0.11
PTPRU-204ENST00000428026 E9PCH4 1651 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 H7C0C1 242 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 ATP5OP48047 213 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 PHEXP78562 749 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 P2RX5Q93086 422 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 DNAJC17Q9NVM6 304 aaKnown RBP15.72■□□□□ 0.11
PTPRU-204ENST00000428026 RCOR1Q9UKL0 485 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 DIP2BQ9P265 1576 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 EIF4E1BA6NMX2 242 aaKnown RBP15.72■□□□□ 0.11
PTPRU-204ENST00000428026 LRRN2O75325 713 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 YARSP54577 528 aaKnown RBP15.72■□□□□ 0.11
PTPRU-204ENST00000428026 CERKLQ49MI3 558 aaPredicted RBP15.72■□□□□ 0.11
PTPRU-204ENST00000428026 SLC27A3Q5K4L6 730 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 TBC1D9BQ66K14 1250 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 GADL1Q6ZQY3 521 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 TOGARAM2Q6ZUX3 1019 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 GSPT2Q8IYD1 628 aaKnown RBP15.72■□□□□ 0.11
PTPRU-204ENST00000428026 NSMCE1Q8WV22 266 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 TRPC6Q9Y210 931 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 NOD1Q9Y239 953 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 NSFP46459 744 aaKnown RBP15.72■□□□□ 0.11
PTPRU-204ENST00000428026 PDE1BQ01064 536 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 KIF23Q02241 960 aaPredicted RBP15.72■□□□□ 0.11
PTPRU-204ENST00000428026 METTL14Q9HCE5 456 aaKnown RBP15.72■□□□□ 0.11
PTPRU-204ENST00000428026 DBNLQ9UJU6 430 aaKnown RBP15.72■□□□□ 0.11
PTPRU-204ENST00000428026 KIAA1024Q9UPX6 916 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 PPRC1Q5VV67 1664 aaKnown RBP15.72■□□□□ 0.11
PTPRU-204ENST00000428026 MED23Q9ULK4 1368 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 SRGAP2O75044 1071 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 APOEP02649 317 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 NR2F2P24468 414 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 NR5A1Q13285 461 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 SGO2Q562F6 1265 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 ARMCX5Q6P1M9 558 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 ARHGEF18Q6ZSZ5 1173 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 DEPTORQ8TB45 409 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 AZI2Q9H6S1 392 aa15.72■□□□□ 0.11
PTPRU-204ENST00000428026 TBC1D10BQ4KMP7 808 aaPredicted RBP15.71■□□□□ 0.11
PTPRU-204ENST00000428026 LRRC23Q53EV4 343 aaPredicted RBP15.71■□□□□ 0.11
PTPRU-204ENST00000428026 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.71■□□□□ 0.11
PTPRU-204ENST00000428026 ELAC2Q9BQ52 826 aaKnown RBP15.71■□□□□ 0.11
PTPRU-204ENST00000428026 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.71■□□□□ 0.11
PTPRU-204ENST00000428026 AS3MTQ9HBK9 375 aa15.71■□□□□ 0.11
PTPRU-204ENST00000428026 COL15A1P39059 1388 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms