RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 GOLGA5Q8TBA6 731 aa15.86■□□□□ 0.13
LIG1-202ENST00000427526 ZBTB9Q96C00 473 aa15.86■□□□□ 0.13
LIG1-202ENST00000427526 FRMPD2Q68DX3 1309 aaPredicted RBP15.85■□□□□ 0.13
LIG1-202ENST00000427526 ADAMTSL1Q8N6G6 1762 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 PLIN4Q96Q06 1357 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 C21orf2O43822 256 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 TDP2O95551 362 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 IDEP14735 1019 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 MAN2A1Q16706 1144 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 DEFB132Q7Z7B7 95 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 COA7Q96BR5 231 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 ZDHHC15Q96MV8 337 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 NUDT12Q9BQG2 462 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 SNHG28P0DPA3 235 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 SHMT1P34896 483 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 SPA17Q15506 151 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 DYMQ7RTS9 669 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 CREG2Q8IUH2 290 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 RAD54LQ92698 747 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 JRKLQ9Y4A0 524 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 PCDHA13Q9Y5I0 950 aa15.85■□□□□ 0.13
LIG1-202ENST00000427526 ZC3H4Q9UPT8 1303 aaKnown RBP15.85■□□□□ 0.13
LIG1-202ENST00000427526 FAM196BA6NMK8 535 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 SYF2O95926 243 aaKnown RBP15.84■□□□□ 0.13
LIG1-202ENST00000427526 ACTN2P35609 894 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 ADCY7P51828 1080 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 LRRC63Q05C16 580 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 FOXR2Q6PJQ5 311 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 LRRC55Q6ZSA7 311 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 CCDC84Q86UT8 332 aaPredicted RBP15.84■□□□□ 0.13
LIG1-202ENST00000427526 TRIM58Q8NG06 486 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 CCDC102AQ96A19 550 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 ACBD3Q9H3P7 528 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 SH2D4AQ9H788 454 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 SNX12Q9UMY4 172 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 POTEMA6NI47 508 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 PRLRP16471 622 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 TMEM266Q2M3C6 531 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 MAP9Q49MG5 647 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 TMEM119Q4V9L6 283 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 ZNF572Q7Z3I7 529 aaPredicted RBP15.84■□□□□ 0.13
LIG1-202ENST00000427526 KCNK18Q7Z418 384 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 IFIH1Q9BYX4 1025 aaKnown RBP15.84■□□□□ 0.13
LIG1-202ENST00000427526 JADE2Q9NQC1 790 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 FAM207AQ9NSI2 230 aaPredicted RBP15.84■□□□□ 0.13
LIG1-202ENST00000427526 IGKV6D-41A0A0C4DH26 115 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 HOXA7P31268 230 aaPredicted RBP15.84■□□□□ 0.13
LIG1-202ENST00000427526 KIF11P52732 1056 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 ASPRV1Q53RT3 343 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 HSP90B2PQ58FF3 399 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 CCNI2Q6ZMN8 369 aaPredicted RBP15.84■□□□□ 0.13
LIG1-202ENST00000427526 SMCR8Q8TEV9 937 aaPredicted RBP15.84■□□□□ 0.13
LIG1-202ENST00000427526 BAP1Q92560 729 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 HPCAL4Q9UM19 191 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 CAPN6Q9Y6Q1 641 aa15.84■□□□□ 0.13
LIG1-202ENST00000427526 MPHOSPH10O00566 681 aaKnown RBP15.83■□□□□ 0.12
LIG1-202ENST00000427526 FGFR1OPO95684 399 aaKnown RBP15.83■□□□□ 0.12
LIG1-202ENST00000427526 PSMD2Q13200 908 aa15.83■□□□□ 0.12
LIG1-202ENST00000427526 CCDC96Q2M329 555 aa15.83■□□□□ 0.12
LIG1-202ENST00000427526 COG1Q8WTW3 980 aa15.83■□□□□ 0.12
LIG1-202ENST00000427526 DDX12PQ92771 950 aa15.83■□□□□ 0.12
LIG1-202ENST00000427526 USO1O60763 962 aaKnown RBP15.83■□□□□ 0.12
LIG1-202ENST00000427526 EIF4A3P38919 411 aaKnown RBP15.83■□□□□ 0.12
LIG1-202ENST00000427526 SHROOM1Q2M3G4 852 aaPredicted RBP15.83■□□□□ 0.12
LIG1-202ENST00000427526 PPP4R3AQ6IN85 833 aa15.83■□□□□ 0.12
LIG1-202ENST00000427526 CDK5RAP3Q96JB5 506 aa15.83■□□□□ 0.12
LIG1-202ENST00000427526 RAB34Q9BZG1 259 aa15.83■□□□□ 0.12
LIG1-202ENST00000427526 FOCADQ5VW36 1801 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 DDTLA6NHG4 134 aaPredicted RBP15.82■□□□□ 0.12
LIG1-202ENST00000427526 HLA-DOAP06340 250 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 MYBL2P10244 700 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 CLK2P49760 499 aaKnown RBP15.82■□□□□ 0.12
LIG1-202ENST00000427526 ATP2B2Q01814 1243 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 ITIH3Q06033 890 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 RAD51AP2Q09MP3 1159 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 ECM1Q16610 540 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 ASTE1Q2TB18 679 aaPredicted RBP15.82■□□□□ 0.12
LIG1-202ENST00000427526 GLIS3Q8NEA6 775 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 DNAJC18Q9H819 358 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 MMRN2Q9H8L6 949 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 GPCPD1Q9NPB8 672 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 FAM198AQ9UFP1 575 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 SWAP70Q9UH65 585 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 SCN9AQ15858 1988 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 LRRC53A6NM62 1247 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 YDJCA8MPS7 323 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 PHACTR2O75167 634 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 TACC1O75410 805 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 RPS6KA5O75582 802 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 ZMYND10O75800 440 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 PRPF6O94906 941 aaKnown RBP15.82■□□□□ 0.12
LIG1-202ENST00000427526 KRT79Q5XKE5 535 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 MMGT1Q8N4V1 131 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 SNX29Q8TEQ0 813 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 MLXIPQ9HAP2 919 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 RIC8AQ9NPQ8 531 aa15.82■□□□□ 0.12
LIG1-202ENST00000427526 PPIP5K2O43314 1243 aa15.81■□□□□ 0.12
LIG1-202ENST00000427526 CAPN2P17655 700 aa15.81■□□□□ 0.12
LIG1-202ENST00000427526 CAGE1Q8TC20 777 aa15.81■□□□□ 0.12
LIG1-202ENST00000427526 HAS1Q92839 578 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms