RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CTNNA1P35221 906 aaKnown RBP11.78□□□□□ -0.52
USP54-204ENST00000422491 SLC8A3P57103 927 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 CUL1Q13616 776 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 HLTFQ14527 1009 aaKnown RBP eCLIP11.78□□□□□ -0.52
USP54-204ENST00000422491 MAN2A1Q16706 1144 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 GKAP1Q5VSY0 366 aaPredicted RBP11.78□□□□□ -0.52
USP54-204ENST00000422491 GIGYF2Q6Y7W6 1299 aaKnown RBP11.78□□□□□ -0.52
USP54-204ENST00000422491 MYH1P12882 1939 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 ABCB11O95342 1321 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 FRMD3A2A2Y4 597 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 F8W031 263 aaPredicted RBP11.78□□□□□ -0.52
USP54-204ENST00000422491 M0R2N6 131 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 IRS4O14654 1257 aaPredicted RBP11.78□□□□□ -0.52
USP54-204ENST00000422491 ORC4O43929 436 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 KLRC1P26715 233 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 CALML3P27482 149 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 RNASE9P60153 205 aaKnown RBP11.78□□□□□ -0.52
USP54-204ENST00000422491 ACCSLQ4AC99 568 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 KLHL7Q8IXQ5 586 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 RASGRP4Q8TDF6 673 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 CCDC47Q96A33 483 aaKnown RBP11.78□□□□□ -0.52
USP54-204ENST00000422491 LRRC45Q96CN5 670 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 NEUROG2Q9H2A3 272 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 NOD2Q9HC29 1040 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 CYP2D7A0A087X1C5 515 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 DCDC2CA8MYV0 355 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 PPP1R12BO60237 982 aaPredicted RBP11.77□□□□□ -0.53
USP54-204ENST00000422491 ASIC1P78348 528 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 HLFQ16534 295 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 KIRREL3Q8IZU9 778 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 HPS3Q969F9 1004 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 HOOK2Q96ED9 719 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 EDEM3Q9BZQ6 932 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 EBF2Q9HAK2 575 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 SLC24A3Q9HC58 644 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 PCDHA4Q9UN74 947 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 PHF20L1A8MW92 1017 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 TLR2O60603 784 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 ATP2C2O75185 946 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 RPSAP08865 295 aaKnown RBP11.77□□□□□ -0.53
USP54-204ENST00000422491 EHHADHQ08426 723 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 C11orf91Q3C1V1 193 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 TDRD12Q587J7 1177 aaKnown RBP11.77□□□□□ -0.53
USP54-204ENST00000422491 RCSD1Q6JBY9 416 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 STAG2Q8N3U4 1231 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 CUL5Q93034 780 aa11.77□□□□□ -0.53
USP54-204ENST00000422491 NOVA2Q9UNW9 492 aaKnown RBP11.77□□□□□ -0.53
USP54-204ENST00000422491 CES2O00748 559 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 CYP7A1P22680 504 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 GBP2P32456 591 aaPredicted RBP11.76□□□□□ -0.53
USP54-204ENST00000422491 CHRNA2Q15822 529 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 NAIF1Q69YI7 327 aaPredicted RBP11.76□□□□□ -0.53
USP54-204ENST00000422491 CNNM4Q6P4Q7 775 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 ARHGAP27Q6ZUM4 889 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 DDX42Q86XP3 938 aaKnown RBP eCLIP11.76□□□□□ -0.53
USP54-204ENST00000422491 SCFD2Q8WU76 684 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.76□□□□□ -0.53
USP54-204ENST00000422491 FBXL5Q9UKA1 691 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 PCDH11XQ9BZA7 1347 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 PCDH11YQ9BZA8 1340 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 BAZ2AQ9UIF9 1905 aaKnown RBP11.76□□□□□ -0.53
USP54-204ENST00000422491 KIF3CO14782 793 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 FLT3P36888 993 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 PRPHP41219 470 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 MAGOHP61326 146 aaKnown RBP11.76□□□□□ -0.53
USP54-204ENST00000422491 KCNMA1Q12791 1236 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 NAA25Q14CX7 972 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 ODF2Q5BJF6 829 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 MSL1Q68DK7 614 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 CACNA2D4Q7Z3S7 1137 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 CABP7Q86V35 215 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 CEP120Q8N960 986 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 MAGOHBQ96A72 148 aaKnown RBP11.76□□□□□ -0.53
USP54-204ENST00000422491 BCCIPQ9P287 314 aaKnown RBP eCLIP11.76□□□□□ -0.53
USP54-204ENST00000422491 LRP2BPQ9P2M1 347 aa11.76□□□□□ -0.53
USP54-204ENST00000422491 NMT2O60551 498 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 PDE8AO60658 829 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 TRIM37O94972 964 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 BCAMP50895 628 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 IRX1P78414 480 aaPredicted RBP11.75□□□□□ -0.53
USP54-204ENST00000422491 GRIK3Q13003 919 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 TXNRD1Q16881 649 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 SLC9C1Q4G0N8 1177 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 HIBCHQ6NVY1 386 aaPredicted RBP11.75□□□□□ -0.53
USP54-204ENST00000422491 CRELD2Q6UXH1 353 aaPredicted RBP11.75□□□□□ -0.53
USP54-204ENST00000422491 CPLX4Q7Z7G2 160 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 SYN2Q92777 582 aaPredicted RBP11.75□□□□□ -0.53
USP54-204ENST00000422491 RIOK1Q9BRS2 568 aaKnown RBP11.75□□□□□ -0.53
USP54-204ENST00000422491 SLC39A2Q9NP94 309 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 SH3GLB2Q9NR46 395 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 SLC12A4Q9UP95 1085 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 MAGEB6P1A0A0J9YX57 407 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 CCT8L1PA6NM43 557 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 LAD1O00515 517 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 SERPING1P05155 500 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 PCP11498 1178 aaKnown RBP11.75□□□□□ -0.53
USP54-204ENST00000422491 MTMR3Q13615 1198 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 ERMARDQ5T6L9 678 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 LRRC55Q6ZSA7 311 aa11.75□□□□□ -0.53
USP54-204ENST00000422491 GPKOWQ92917 476 aaPredicted RBP eCLIP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms