RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 TTC28Q96AY4 2481 aa13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 TRIP12Q14669 1992 aaPredicted RBP13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 HAS3O00219 553 aa13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 PRC1O43663 620 aa13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 PPFIA4O75335 1185 aa13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 SMARCA1P28370 1054 aa13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 MCM5P33992 734 aa13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 GNAQP50148 359 aa13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 KIAA0753Q2KHM9 967 aa13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 LRRC8DQ7L1W4 858 aa13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 TMTC2Q8N394 836 aa13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 DHX38Q92620 1227 aaKnown RBP13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 RRP36Q96EU6 259 aaKnown RBP13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 TMEM87BQ96K49 555 aa13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 ALG1Q9BT22 464 aa13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 LSG1Q9H089 658 aaKnown RBP13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 HDAC6Q9UBN7 1215 aa13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 SEC63Q9UGP8 760 aaKnown RBP13.35□□□□□ -0.27
SQSTM1-203ENST00000422245 EYSQ5T1H1 3165 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 SH2B2O14492 632 aaPredicted RBP13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 CALM1P0DP23 149 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 CALM2P0DP24 149 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 CALM3P0DP25 149 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 KCNJ6P48051 423 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 PTK7Q13308 1070 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 ADGRE1Q14246 886 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 HSDL1Q3SXM5 330 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 NFXL1Q6ZNB6 911 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 SYMPKQ92797 1274 aaKnown RBP13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 CUL5Q93034 780 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 INPP4AQ96PE3 977 aaPredicted RBP13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 ESYT1Q9BSJ8 1104 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 MYL10Q9BUA6 226 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 MLXIPQ9HAP2 919 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 TET1Q8NFU7 2136 aa13.34□□□□□ -0.27
SQSTM1-203ENST00000422245 CCDC69A6NI79 296 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 PIK3CDO00329 1044 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 SLC27A2O14975 620 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 CXCL10P02778 98 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 CA3P07451 260 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 CKBP12277 381 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 MYOGP15173 224 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 IGFBP4P22692 258 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 ICAM3P32942 547 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 LIFRP42702 1097 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 XRRA1Q6P2D8 792 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 METTL7BQ6UX53 244 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 HERC6Q8IVU3 1022 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 SMARCC2Q8TAQ2 1214 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 PIBF1Q8WXW3 757 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 ANO2Q9NQ90 1003 aa13.33□□□□□ -0.28
SQSTM1-203ENST00000422245 KIF28PB7ZC32 967 aa13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 NOP56O00567 594 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 FIBPO43427 364 aa13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 SORBS3O60504 671 aa13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 MRPS9P82933 396 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 SP2Q02086 613 aa13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 NEDD9Q14511 834 aa13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 BMP2KLQ5H9B9 411 aa13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 TJAP1Q5JTD0 557 aa13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 PCNX4Q63HM2 1172 aa13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 CREB3L3Q68CJ9 461 aa13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 CNKSR3Q6P9H4 555 aa13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 GPKOWQ92917 476 aaPredicted RBP eCLIP13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 C16orf70Q9BSU1 422 aa13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 THEGQ9P2T0 379 aa13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 PRUNE2Q8WUY3 3088 aa13.32□□□□□ -0.28
SQSTM1-203ENST00000422245 SPATA31C2B4DYI2 1134 aa13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 NBNO60934 754 aa13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 EFCAB14O75071 495 aa13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 PLEKHA8P1O95397 391 aa13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 LGALS2P05162 132 aa13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 WDR5P61964 334 aaKnown RBP13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 NECTIN1Q15223 517 aa13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 TRIM71Q2Q1W2 868 aaKnown RBP13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 RNF20Q5VTR2 975 aa13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 CENPQQ7L2Z9 268 aaPredicted RBP13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 SERINC5Q86VE9 423 aa13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 ATXN2LQ8WWM7 1075 aaKnown RBP13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 PPM1EQ8WY54 764 aa13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 ZFP91Q96JP5 570 aaPredicted RBP13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 SLC12A7Q9Y666 1083 aa13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 EMSYQ7Z589 1322 aa13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 PTPRSQ13332 1948 aa13.31□□□□□ -0.28
SQSTM1-203ENST00000422245 ABHD14A-ACY1A0A1B0GW23 586 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 C17orf102A2RUQ5 167 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 H3BRB1 525 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 MEIS2O14770 477 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 CAND2O75155 1236 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 HOXC8P31273 242 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 SEMA3FQ13275 785 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 GPNMBQ14956 572 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 TRAF7Q6Q0C0 670 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 USP17L6PQ6QN14 398 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 TMTC3Q6ZXV5 915 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 NLRX1Q86UT6 975 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 SGMS1Q86VZ5 419 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 SRBD1Q8N5C6 995 aaKnown RBP13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 WNT8BQ93098 351 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 SENP7Q9BQF6 1050 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms