RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 DGKHQ86XP1 1220 aa15.05■□□□□ -0
LINC00339-202ENST00000416769 NSUN6Q8TEA1 469 aaKnown RBP15.05■□□□□ -0
LINC00339-202ENST00000416769 C17orf80Q9BSJ5 609 aa15.05■□□□□ -0
LINC00339-202ENST00000416769 ZBED2Q9BTP6 218 aa15.05■□□□□ -0
LINC00339-202ENST00000416769 PXMP2Q9NR77 195 aa15.05■□□□□ -0
LINC00339-202ENST00000416769 HAS3O00219 553 aa15.04■□□□□ -0
LINC00339-202ENST00000416769 GJB5O95377 273 aa15.04■□□□□ -0
LINC00339-202ENST00000416769 F2P00734 622 aa15.04■□□□□ -0
LINC00339-202ENST00000416769 CFBP00751 764 aa15.04■□□□□ -0
LINC00339-202ENST00000416769 NR3C2P08235 984 aa15.04■□□□□ -0
LINC00339-202ENST00000416769 STXBP2Q15833 593 aa15.04■□□□□ -0
LINC00339-202ENST00000416769 AAK1Q2M2I8 961 aa15.04■□□□□ -0
LINC00339-202ENST00000416769 ARHGEF16Q5VV41 709 aa15.04■□□□□ -0
LINC00339-202ENST00000416769 FBXO11Q86XK2 927 aa15.04■□□□□ -0
LINC00339-202ENST00000416769 C7orf31Q8N865 590 aa15.04■□□□□ -0
LINC00339-202ENST00000416769 ZSCAN10Q96SZ4 725 aaPredicted RBP15.04■□□□□ -0
LINC00339-202ENST00000416769 MPHOSPH6Q99547 160 aaKnown RBP15.04■□□□□ -0
LINC00339-202ENST00000416769 KAT14Q9H8E8 782 aa15.04■□□□□ -0
LINC00339-202ENST00000416769 ZSWIM5Q9P217 1185 aa15.04■□□□□ -0
LINC00339-202ENST00000416769 MRVI1Q9Y6F6 885 aa15.04■□□□□ -0
LINC00339-202ENST00000416769 MUC6Q6W4X9 2439 aa15.03■□□□□ -0
LINC00339-202ENST00000416769 ZNF213O14771 459 aa15.03■□□□□ -0
LINC00339-202ENST00000416769 MYCLP12524 364 aaPredicted RBP15.03■□□□□ -0
LINC00339-202ENST00000416769 CASTP20810 708 aaKnown RBP15.03■□□□□ -0
LINC00339-202ENST00000416769 MKRN4PQ13434 485 aaPredicted RBP15.03■□□□□ -0
LINC00339-202ENST00000416769 DGKDQ16760 1214 aa15.03■□□□□ -0
LINC00339-202ENST00000416769 HSDL1Q3SXM5 330 aa15.03■□□□□ -0
LINC00339-202ENST00000416769 ANKS1AQ92625 1134 aa15.03■□□□□ -0
LINC00339-202ENST00000416769 FAM122AQ96E09 287 aa15.03■□□□□ -0
LINC00339-202ENST00000416769 RNF41Q9H4P4 317 aaPredicted RBP15.03■□□□□ -0
LINC00339-202ENST00000416769 SENP2Q9HC62 589 aa15.03■□□□□ -0
LINC00339-202ENST00000416769 PNMA2Q9UL42 364 aa15.03■□□□□ -0
LINC00339-202ENST00000416769 COG5Q9UP83 839 aa15.03■□□□□ -0
LINC00339-202ENST00000416769 ATG2AQ2TAZ0 1938 aa15.02■□□□□ -0
LINC00339-202ENST00000416769 PARP1P09874 1014 aaKnown RBP15.02■□□□□ -0
LINC00339-202ENST00000416769 UBA1P22314 1058 aaKnown RBP15.02■□□□□ -0
LINC00339-202ENST00000416769 HSD17B4P51659 736 aa15.02■□□□□ -0
LINC00339-202ENST00000416769 ERVK-21P61565 698 aa15.02■□□□□ -0
LINC00339-202ENST00000416769 ASPRV1Q53RT3 343 aa15.02■□□□□ -0
LINC00339-202ENST00000416769 CYB5R4Q7L1T6 521 aa15.02■□□□□ -0
LINC00339-202ENST00000416769 CCDC155Q8N6L0 562 aa15.02■□□□□ -0
LINC00339-202ENST00000416769 DBF4BQ8NFT6 615 aa15.02■□□□□ -0
LINC00339-202ENST00000416769 PPTC7Q8NI37 304 aa15.02■□□□□ -0
LINC00339-202ENST00000416769 PDCD2LQ9BRP1 358 aa15.02■□□□□ -0
LINC00339-202ENST00000416769 C1QTNF1Q9BXJ1 281 aa15.02■□□□□ -0
LINC00339-202ENST00000416769 TAF6LQ9Y6J9 622 aa15.02■□□□□ -0
LINC00339-202ENST00000416769 B4DLN1 442 aa15.01□□□□□ -0.01
LINC00339-202ENST00000416769 LGR5O75473 907 aa15.01□□□□□ -0.01
LINC00339-202ENST00000416769 GGPS1O95749 300 aa15.01□□□□□ -0.01
LINC00339-202ENST00000416769 PCP11498 1178 aaKnown RBP15.01□□□□□ -0.01
LINC00339-202ENST00000416769 HOXD8P13378 290 aaPredicted RBP15.01□□□□□ -0.01
LINC00339-202ENST00000416769 IL9P15248 144 aa15.01□□□□□ -0.01
LINC00339-202ENST00000416769 MRPL12P52815 198 aaKnown RBP15.01□□□□□ -0.01
LINC00339-202ENST00000416769 PTK7Q13308 1070 aa15.01□□□□□ -0.01
LINC00339-202ENST00000416769 MYSM1Q5VVJ2 828 aa15.01□□□□□ -0.01
LINC00339-202ENST00000416769 SKAP1Q86WV1 359 aa15.01□□□□□ -0.01
LINC00339-202ENST00000416769 DHX37Q8IY37 1157 aaKnown RBP15.01□□□□□ -0.01
LINC00339-202ENST00000416769 EMID1Q96A84 441 aaPredicted RBP15.01□□□□□ -0.01
LINC00339-202ENST00000416769 SPATA33Q96N06 139 aa15.01□□□□□ -0.01
LINC00339-202ENST00000416769 TGS1Q96RS0 853 aaKnown RBP15.01□□□□□ -0.01
LINC00339-202ENST00000416769 IWS1Q96ST2 819 aa15.01□□□□□ -0.01
LINC00339-202ENST00000416769 RAD9AQ99638 391 aa15.01□□□□□ -0.01
LINC00339-202ENST00000416769 C16orf70Q9BSU1 422 aa15.01□□□□□ -0.01
LINC00339-202ENST00000416769 UBE2ZQ9H832 354 aaPredicted RBP15.01□□□□□ -0.01
LINC00339-202ENST00000416769 MRPL11Q9Y3B7 192 aaKnown RBP15.01□□□□□ -0.01
LINC00339-202ENST00000416769 ABHD14A-ACY1A0A1B0GW23 586 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 EIF3JO75822 258 aaKnown RBP15□□□□□ -0.01
LINC00339-202ENST00000416769 CTSHP09668 335 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 KCNA5P22460 613 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 THPOP40225 353 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 LAMC2Q13753 1193 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 PGM5Q15124 567 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 SEC23AQ15436 765 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 CELF3Q5SZQ8 465 aaKnown RBP15□□□□□ -0.01
LINC00339-202ENST00000416769 TTC22Q5TAA0 569 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 IQCA1Q86XH1 822 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 TRIM50Q86XT4 487 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 HOMER1Q86YM7 354 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 MCF2L2Q86YR7 1114 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 MYOCDQ8IZQ8 938 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 GADD45GIP1Q8TAE8 222 aaPredicted RBP15□□□□□ -0.01
LINC00339-202ENST00000416769 MAD2L2Q9UI95 211 aa15□□□□□ -0.01
LINC00339-202ENST00000416769 TREHO43280 583 aa14.99□□□□□ -0.01
LINC00339-202ENST00000416769 IKBKEQ14164 716 aa14.99□□□□□ -0.01
LINC00339-202ENST00000416769 TMEM31Q5JXX7 168 aa14.99□□□□□ -0.01
LINC00339-202ENST00000416769 SERINC5Q86VE9 423 aa14.99□□□□□ -0.01
LINC00339-202ENST00000416769 FCHSD1Q86WN1 690 aa14.99□□□□□ -0.01
LINC00339-202ENST00000416769 MTMR8Q96EF0 704 aa14.99□□□□□ -0.01
LINC00339-202ENST00000416769 PIGSQ96S52 555 aa14.99□□□□□ -0.01
LINC00339-202ENST00000416769 AMNQ9BXJ7 453 aa14.99□□□□□ -0.01
LINC00339-202ENST00000416769 DIAPH3Q9NSV4 1193 aa14.99□□□□□ -0.01
LINC00339-202ENST00000416769 NLRC5Q86WI3 1866 aa14.98□□□□□ -0.01
LINC00339-202ENST00000416769 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.98□□□□□ -0.01
LINC00339-202ENST00000416769 KLRF2D3W0D1 207 aa14.98□□□□□ -0.01
LINC00339-202ENST00000416769 H3BQ06 376 aaPredicted RBP14.98□□□□□ -0.01
LINC00339-202ENST00000416769 CYTH3O43739 400 aa14.98□□□□□ -0.01
LINC00339-202ENST00000416769 GHRHRQ02643 423 aa14.98□□□□□ -0.01
LINC00339-202ENST00000416769 SEMA3FQ13275 785 aa14.98□□□□□ -0.01
LINC00339-202ENST00000416769 VSIG10LQ86VR7 867 aa14.98□□□□□ -0.01
LINC00339-202ENST00000416769 FBXO22Q8NEZ5 403 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms