RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 GRB10Q13322 594 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 CCDC96Q2M329 555 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 SLC9C1Q4G0N8 1177 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 TTMPQ5BVD1 217 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 ARFGAP2Q8N6H7 521 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 MAGEC3Q8TD91 643 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 ACTRT1Q8TDG2 376 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 ABCF2Q9UG63 623 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 SWAP70Q9UH65 585 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 TTC7AQ9ULT0 858 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 CYP2D7A0A087X1C5 515 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 FRMD3A2A2Y4 597 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 CCDC188H7C350 402 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 MEFVO15553 781 aaPredicted RBP6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 PHACTR2O75167 634 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 ZBTB48P10074 688 aaPredicted RBP6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 VEGFAP15692 232 aaPredicted RBP6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 NPEPPSP55786 919 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 ASIC1P78348 528 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 FKBP3Q00688 224 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 BIRC3Q13489 604 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 SLC18A3Q16572 532 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 IFI16Q16666 785 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 INF2Q27J81 1249 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 EDRF1Q3B7T1 1238 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 C6orf89Q6UWU4 347 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 NEDD1Q8NHV4 660 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 WDR66Q8TBY9 1149 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 BCAS4Q8TDM0 211 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 PIK3R5Q8WYR1 880 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 RAD54LQ92698 747 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 PBKQ96KB5 322 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 CAPZA3Q96KX2 299 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 TSG101Q99816 390 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 NYXQ9GZU5 481 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 ISCUQ9H1K1 167 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 NIP7Q9Y221 180 aaKnown RBP eCLIP6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 ATP6V0A2Q9Y487 856 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 DUSP10Q9Y6W6 482 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 PITPNM2Q9BZ72 1349 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 KDM3AQ9Y4C1 1321 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 hCG_1642624A0A1W2PR95 340 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 C5orf60A6NFR6 353 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 SMIM22K7EJ46 135 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 SNAP23O00161 211 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 AKR1B10O60218 316 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 GCFC2P16383 781 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 HIBADHP31937 336 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 PRKCIP41743 596 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 GNGT1P63211 74 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 TFAP4Q01664 338 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 KCNMA1Q12791 1236 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 CLUL1Q15846 466 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 CCDC181Q5TID7 509 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 AGBL2Q5U5Z8 902 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 C2CD5Q86YS7 1000 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 TSEN2Q8NCE0 465 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 SCFD2Q8WU76 684 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 LARP4BQ92615 738 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 FAM163AQ96GL9 167 aaPredicted RBP6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 ATP6V1G3Q96LB4 118 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 ZIM3Q96PE6 472 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 PNMA5Q96PV4 448 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 RUFY1Q96T51 708 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 DEF6Q9H4E7 631 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 MAPK8IP1Q9UQF2 711 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 BTAF1O14981 1849 aa6.33□□□□□ -1.4
CCDC88A-203ENST00000412148 LOC102724428A0A0B4J2F2 783 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 MACROD2A1Z1Q3 448 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 TESPA1A2RU30 521 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 LRRC53A6NM62 1247 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 PP2D1A8MPX8 630 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 NMT2O60551 498 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 PPP1R37O75864 691 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 NOL4O94818 638 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 MOCS3O95396 460 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 FAM107AO95990 144 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 LDHCP07864 332 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 SNHG28P0DPA3 235 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 DSG3P32926 999 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 CCT5P48643 541 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 KLK7P49862 253 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 GTF2A1P52655 376 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 SIK1P57059 783 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 TNNC1P63316 161 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 CYP27A1Q02318 531 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 PPP2R5EQ16537 467 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 TMEM266Q2M3C6 531 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 C16orf86Q6ZW13 317 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 SLFN11Q7Z7L1 901 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 TRIM59Q8IWR1 403 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 STAG2Q8N3U4 1231 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 RASGEF1CQ8N431 466 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 MTMR8Q96EF0 704 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 ZFP91Q96JP5 570 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 TRERF1Q96PN7 1200 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 NCAPGQ9BPX3 1015 aa6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 ACTR5Q9H9F9 607 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 DIS3Q9Y2L1 958 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-203ENST00000412148 COL4A3BPQ9Y5P4 624 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms