RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 RPS8P62241 208 aaKnown RBP23.16■■□□□ 1.3
CTCF-202ENST00000401394 RAPGEF1Q13905 1077 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 MAN2A1Q16706 1144 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 CFAP58Q5T655 872 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 DGKHQ86XP1 1220 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 A0A1B0GUL6 1792 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 GOLGA8KD6RF30 607 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 RASA1P20936 1047 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 LSP1P33241 339 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 MNAT1P51948 309 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 MAATS1Q7Z4T9 603 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 NOX5Q96PH1 765 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 HNRNPH3P31942 346 aaKnown RBP23.16■■□□□ 1.3
CTCF-202ENST00000401394 IRX3P78415 501 aaPredicted RBP23.16■■□□□ 1.3
CTCF-202ENST00000401394 RNF187Q5TA31 235 aaPredicted RBP23.16■■□□□ 1.3
CTCF-202ENST00000401394 DHX37Q8IY37 1157 aaKnown RBP23.16■■□□□ 1.3
CTCF-202ENST00000401394 IQCKQ8N0W5 287 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 LARP4BQ92615 738 aaKnown RBP23.16■■□□□ 1.3
CTCF-202ENST00000401394 ZMYND12Q9H0C1 365 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 ZHX3Q9H4I2 956 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 SH3GLB2Q9NR46 395 aa23.16■■□□□ 1.3
CTCF-202ENST00000401394 TMOD1P28289 359 aa23.15■■□□□ 1.3
CTCF-202ENST00000401394 FAM83BQ5T0W9 1011 aa23.15■■□□□ 1.3
CTCF-202ENST00000401394 MMS22LQ6ZRQ5 1243 aa23.15■■□□□ 1.3
CTCF-202ENST00000401394 CALML4Q96GE6 196 aa23.15■■□□□ 1.3
CTCF-202ENST00000401394 NEUROG2Q9H2A3 272 aa23.15■■□□□ 1.3
CTCF-202ENST00000401394 CDK17Q00537 523 aa23.15■■□□□ 1.3
CTCF-202ENST00000401394 KIAA0753Q2KHM9 967 aa23.15■■□□□ 1.3
CTCF-202ENST00000401394 CEP85LQ5SZL2 805 aa23.15■■□□□ 1.3
CTCF-202ENST00000401394 SNX29Q8TEQ0 813 aa23.15■■□□□ 1.3
CTCF-202ENST00000401394 CCDC47Q96A33 483 aaKnown RBP23.15■■□□□ 1.3
CTCF-202ENST00000401394 BCCIPQ9P287 314 aaKnown RBP eCLIP23.15■■□□□ 1.3
CTCF-202ENST00000401394 DCDC2CA8MYV0 355 aa23.14■■□□□ 1.3
CTCF-202ENST00000401394 HLTFQ14527 1009 aaKnown RBP eCLIP23.14■■□□□ 1.3
CTCF-202ENST00000401394 OPA1O60313 960 aa23.14■■□□□ 1.29
CTCF-202ENST00000401394 ATP2C2O75185 946 aa23.14■■□□□ 1.29
CTCF-202ENST00000401394 CALCRLQ16602 461 aa23.14■■□□□ 1.29
CTCF-202ENST00000401394 FIGNQ5HY92 759 aa23.14■■□□□ 1.29
CTCF-202ENST00000401394 LRRC47Q8N1G4 583 aaKnown RBP23.14■■□□□ 1.29
CTCF-202ENST00000401394 CEP95Q96GE4 821 aa23.14■■□□□ 1.29
CTCF-202ENST00000401394 CDK5RAP3Q96JB5 506 aa23.14■■□□□ 1.29
CTCF-202ENST00000401394 CFAP221Q4G0U5 840 aa23.13■■□□□ 1.29
CTCF-202ENST00000401394 CCDC40Q4G0X9 1142 aa23.13■■□□□ 1.29
CTCF-202ENST00000401394 SBK1Q52WX2 424 aa23.13■■□□□ 1.29
CTCF-202ENST00000401394 NAA35Q5VZE5 725 aa23.13■■□□□ 1.29
CTCF-202ENST00000401394 EMBQ6PCB8 327 aa23.13■■□□□ 1.29
CTCF-202ENST00000401394 IKZF4Q9H2S9 585 aa23.13■■□□□ 1.29
CTCF-202ENST00000401394 TNNI2P48788 182 aa23.13■■□□□ 1.29
CTCF-202ENST00000401394 AMIGO3Q86WK7 504 aa23.13■■□□□ 1.29
CTCF-202ENST00000401394 MARCH10Q8NA82 808 aaPredicted RBP23.13■■□□□ 1.29
CTCF-202ENST00000401394 CD248Q9HCU0 757 aa23.13■■□□□ 1.29
CTCF-202ENST00000401394 PLAAQ9Y263 795 aa23.13■■□□□ 1.29
CTCF-202ENST00000401394 E9PMD0 336 aa23.13■■□□□ 1.29
CTCF-202ENST00000401394 CPP00450 1065 aa23.13■■□□□ 1.29
CTCF-202ENST00000401394 PCP11498 1178 aaKnown RBP23.13■■□□□ 1.29
CTCF-202ENST00000401394 IFT88Q13099 833 aa23.13■■□□□ 1.29
CTCF-202ENST00000401394 KCNK3O14649 394 aa23.12■■□□□ 1.29
CTCF-202ENST00000401394 LCA5LO95447 670 aa23.12■■□□□ 1.29
CTCF-202ENST00000401394 ERVK-9P63128 1117 aa23.12■■□□□ 1.29
CTCF-202ENST00000401394 GPCPD1Q9NPB8 672 aa23.12■■□□□ 1.29
CTCF-202ENST00000401394 PRPHP41219 470 aa23.12■■□□□ 1.29
CTCF-202ENST00000401394 NFIXQ14938 502 aa23.12■■□□□ 1.29
CTCF-202ENST00000401394 UNC13DQ70J99 1090 aa23.12■■□□□ 1.29
CTCF-202ENST00000401394 GDF3Q9NR23 364 aa23.12■■□□□ 1.29
CTCF-202ENST00000401394 GRID2IPA4D2P6 1211 aa23.11■■□□□ 1.29
CTCF-202ENST00000401394 ITGA4P13612 1032 aa23.11■■□□□ 1.29
CTCF-202ENST00000401394 NR1D1P20393 614 aa23.11■■□□□ 1.29
CTCF-202ENST00000401394 ZNF572Q7Z3I7 529 aaPredicted RBP23.11■■□□□ 1.29
CTCF-202ENST00000401394 REXO1Q8N1G1 1221 aaKnown RBP23.11■■□□□ 1.29
CTCF-202ENST00000401394 EYA3Q99504 573 aa23.11■■□□□ 1.29
CTCF-202ENST00000401394 E7EVH7 732 aa23.11■■□□□ 1.29
CTCF-202ENST00000401394 H0YHG0 523 aa23.11■■□□□ 1.29
CTCF-202ENST00000401394 COPB2P35606 906 aa23.11■■□□□ 1.29
CTCF-202ENST00000401394 LINC00116Q8NCU8 138 aa23.11■■□□□ 1.29
CTCF-202ENST00000401394 CAVIN3Q969G5 261 aa23.11■■□□□ 1.29
CTCF-202ENST00000401394 DDX47Q9H0S4 455 aaKnown RBP23.11■■□□□ 1.29
CTCF-202ENST00000401394 MYL1P05976 194 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 SF3B3Q15393 1217 aaKnown RBP23.1■■□□□ 1.29
CTCF-202ENST00000401394 ADAT2Q7Z6V5 191 aaKnown RBP23.1■■□□□ 1.29
CTCF-202ENST00000401394 IFT20Q8IY31 132 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 DAGLBQ8NCG7 672 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 PRLRP16471 622 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 SLC16A2P36021 539 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 AMPD3Q01432 767 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 SOGA3Q5TF21 947 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 SFMBT2Q5VUG0 894 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 OTUD6BQ8N6M0 293 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 ZNF473Q8WTR7 871 aaKnown RBP23.1■■□□□ 1.29
CTCF-202ENST00000401394 MTMR9Q96QG7 549 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 TRIM31Q9BZY9 425 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 QPCTQ16769 361 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 KRT25Q7Z3Z0 450 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 CCT8L2Q96SF2 557 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 C6orf50Q9HD87 102 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 ANKIB1Q9P2G1 1089 aa23.1■■□□□ 1.29
CTCF-202ENST00000401394 LDHBP07195 334 aaKnown RBP23.09■■□□□ 1.29
CTCF-202ENST00000401394 SLC9A1P19634 815 aa23.09■■□□□ 1.29
CTCF-202ENST00000401394 CDK8P49336 464 aa23.09■■□□□ 1.29
CTCF-202ENST00000401394 SKOR1P84550 965 aa23.09■■□□□ 1.29
CTCF-202ENST00000401394 COASYQ13057 564 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms