RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 SMRP1Q8NCR6 262 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 DBF4BQ8NFT6 615 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 MSLNLQ96KJ4 702 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 C11orf84Q9BUA3 381 aaPredicted RBP11.14□□□□□ -0.63
NEDD9-203ENST00000397378 PHF7Q9BWX1 381 aaPredicted RBP11.14□□□□□ -0.63
NEDD9-203ENST00000397378 LRRCC1Q9C099 1032 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 ECHDC1Q9NTX5 307 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 CCPG1Q9ULG6 757 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 PRR12Q9ULL5 1215 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 DMXL1Q9Y485 3027 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 APPP05067 770 aa11.13□□□□□ -0.63
NEDD9-203ENST00000397378 ICAM1P05362 532 aa11.13□□□□□ -0.63
NEDD9-203ENST00000397378 SLC3A2P08195 630 aaKnown RBP11.13□□□□□ -0.63
NEDD9-203ENST00000397378 PUM1Q14671 1186 aaKnown RBP eCLIP11.13□□□□□ -0.63
NEDD9-203ENST00000397378 MBTPS1Q14703 1052 aa11.13□□□□□ -0.63
NEDD9-203ENST00000397378 KCTD1Q719H9 257 aa11.13□□□□□ -0.63
NEDD9-203ENST00000397378 SESTD1Q86VW0 696 aa11.13□□□□□ -0.63
NEDD9-203ENST00000397378 FIBCD1Q8N539 461 aa11.13□□□□□ -0.63
NEDD9-203ENST00000397378 PPP2R3CQ969Q6 453 aa11.13□□□□□ -0.63
NEDD9-203ENST00000397378 NACAP1Q9BZK3 213 aa11.13□□□□□ -0.63
NEDD9-203ENST00000397378 CHMP4BQ9H444 224 aaKnown RBP11.13□□□□□ -0.63
NEDD9-203ENST00000397378 USP15Q9Y4E8 981 aaPredicted RBP11.13□□□□□ -0.63
NEDD9-203ENST00000397378 MYH7BA7E2Y1 1941 aa11.13□□□□□ -0.63
NEDD9-203ENST00000397378 EMSYQ7Z589 1322 aa11.12□□□□□ -0.63
NEDD9-203ENST00000397378 MYH6P13533 1939 aa11.12□□□□□ -0.63
NEDD9-203ENST00000397378 M0R2C6 588 aa11.12□□□□□ -0.63
NEDD9-203ENST00000397378 TXNP10599 105 aaKnown RBP11.12□□□□□ -0.63
NEDD9-203ENST00000397378 SNAP25P60880 206 aa11.12□□□□□ -0.63
NEDD9-203ENST00000397378 BAATQ14032 418 aaPredicted RBP11.12□□□□□ -0.63
NEDD9-203ENST00000397378 KIAA2013Q8IYS2 634 aa11.12□□□□□ -0.63
NEDD9-203ENST00000397378 C7orf31Q8N865 590 aa11.12□□□□□ -0.63
NEDD9-203ENST00000397378 KCNG4Q8TDN1 519 aa11.12□□□□□ -0.63
NEDD9-203ENST00000397378 SCFD2Q8WU76 684 aa11.12□□□□□ -0.63
NEDD9-203ENST00000397378 TOP1MTQ969P6 601 aa11.12□□□□□ -0.63
NEDD9-203ENST00000397378 CHMP4CQ96CF2 233 aa11.12□□□□□ -0.63
NEDD9-203ENST00000397378 IFIH1Q9BYX4 1025 aaKnown RBP11.12□□□□□ -0.63
NEDD9-203ENST00000397378 RANBP17Q9H2T7 1088 aaKnown RBP11.12□□□□□ -0.63
NEDD9-203ENST00000397378 CLEC1BQ9P126 229 aa11.12□□□□□ -0.63
NEDD9-203ENST00000397378 GTF2IRD1Q9UHL9 959 aa11.12□□□□□ -0.63
NEDD9-203ENST00000397378 EPG5Q9HCE0 2579 aa11.12□□□□□ -0.63
NEDD9-203ENST00000397378 C5orf67F2Z3F1 127 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 RB1P06400 928 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 NOVP48745 357 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 PPARAQ07869 468 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 PDE4DQ08499 809 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 COASYQ13057 564 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 PTK7Q13308 1070 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 TRAF7Q6Q0C0 670 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 BTNL9Q6UXG8 535 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 NAPBQ9H115 298 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 IL17RBQ9NRM6 502 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 HDAC6Q9UBN7 1215 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 BARX2Q9UMQ3 279 aaPredicted RBP11.11□□□□□ -0.63
NEDD9-203ENST00000397378 STX8Q9UNK0 236 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 RWDD3Q9Y3V2 267 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 GVINP1Q7Z2Y8 2422 aa11.11□□□□□ -0.63
NEDD9-203ENST00000397378 PTPDC1A2A3K4 754 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 NFIBO00712 420 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 SMARCA5O60264 1052 aaPredicted RBP11.1□□□□□ -0.63
NEDD9-203ENST00000397378 MMP1P03956 469 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 MMP3P08254 477 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 EDNRBP24530 442 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 BMPR1AP36894 532 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 HNRNPUQ00839 825 aaKnown RBP eCLIP11.1□□□□□ -0.63
NEDD9-203ENST00000397378 ST3GAL2Q16842 350 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 PLEKHG4Q58EX7 1191 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 RASGRP2Q7LDG7 609 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 DNERQ8NFT8 737 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 DCAF4Q8WV16 495 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 AFG1LQ8WV93 481 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 WNT8BQ93098 351 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 IL17RAQ96F46 866 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 GPATCH3Q96I76 525 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 MPHOSPH6Q99547 160 aaKnown RBP11.1□□□□□ -0.63
NEDD9-203ENST00000397378 HINFPQ9BQA5 517 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 ALG1Q9BT22 464 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 PNMA2Q9UL42 364 aa11.1□□□□□ -0.63
NEDD9-203ENST00000397378 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.1□□□□□ -0.63
NEDD9-203ENST00000397378 TSPY2A6NKD2 308 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 RSPH10B2B2RC85 870 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 RSPH10BP0C881 870 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 CASTP20810 708 aaKnown RBP11.09□□□□□ -0.63
NEDD9-203ENST00000397378 SP100P23497 879 aaPredicted RBP11.09□□□□□ -0.63
NEDD9-203ENST00000397378 THPOP40225 353 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 TRIM71Q2Q1W2 868 aaKnown RBP11.09□□□□□ -0.63
NEDD9-203ENST00000397378 SYDE2Q5VT97 1194 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 CHST3Q7LGC8 479 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 ADGRD2Q7Z7M1 963 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 DHX37Q8IY37 1157 aaKnown RBP11.09□□□□□ -0.63
NEDD9-203ENST00000397378 EFHBQ8N7U6 833 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 CLEC4DQ8WXI8 215 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 SEPT8Q92599 483 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 KAT2BQ92831 832 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 MFSD1Q9H3U5 465 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 PCDHGC5Q9Y5F6 944 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 BAHCC1Q9P281 2608 aa11.09□□□□□ -0.63
NEDD9-203ENST00000397378 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.08□□□□□ -0.64
NEDD9-203ENST00000397378 B4DLN1 442 aa11.08□□□□□ -0.64
NEDD9-203ENST00000397378 NMT2O60551 498 aa11.08□□□□□ -0.64
NEDD9-203ENST00000397378 ARIH2O95376 493 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms