RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 E9PMD0 336 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 PRELPP51888 382 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 TTLL4Q14679 1199 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 TSGA10IPQ3SY00 556 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 CEP55Q53EZ4 464 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 TDRD12Q587J7 1177 aaKnown RBP11.43□□□□□ -0.58
COL6A3-205ENST00000392004 FKBP1CQ5VVH2 108 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 OTUD6AQ7L8S5 288 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 NAP1L4Q99733 375 aaKnown RBP11.43□□□□□ -0.58
COL6A3-205ENST00000392004 MANSC4A6NHS7 340 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-205ENST00000392004 ZNF280AP59817 542 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-205ENST00000392004 STRN3Q13033 797 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 ZNF784Q8NCA9 323 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-205ENST00000392004 KIF18AQ8NI77 898 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 NLRP7Q8WX94 980 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 GMLQ99445 158 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 SPZ1Q9BXG8 430 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 DISC1Q9NRI5 854 aa11.43□□□□□ -0.58
COL6A3-205ENST00000392004 CNTNAP5Q8WYK1 1306 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 ERICH4A6NGS2 130 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 CXCL11O14625 94 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 FKBP1AP62942 108 aaKnown RBP11.42□□□□□ -0.58
COL6A3-205ENST00000392004 USP49Q70CQ1 688 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 PLEKHH3Q7Z736 793 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 MOV10L1Q9BXT6 1211 aaKnown RBP11.42□□□□□ -0.58
COL6A3-205ENST00000392004 WDR11Q9BZH6 1224 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 CTNND2Q9UQB3 1225 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 PALM3A6NDB9 673 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-205ENST00000392004 ZBBXA8MT70 800 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 TFRCP02786 760 aaKnown RBP11.42□□□□□ -0.58
COL6A3-205ENST00000392004 ADORA2AP29274 412 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 FCGRTP55899 365 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 FAM178BQ8IXR5 827 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 SLFN12Q8IYM2 578 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 OR6J1Q8NGC5 347 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 DYDC2Q96IM9 177 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 WNK4Q96J92 1243 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 TIGD1Q96MW7 591 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 RNF208Q9H0X6 261 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 NRBP2Q9NSY0 501 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 CALCOCO1Q9P1Z2 691 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 ELP1O95163 1332 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 K7ENM7 598 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 STXBP3O00186 592 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 ATP6V0A1Q93050 837 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.42□□□□□ -0.58
COL6A3-205ENST00000392004 VPS16Q9H269 839 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 CLSTN2Q9H4D0 955 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.42□□□□□ -0.58
COL6A3-205ENST00000392004 RIPK3Q9Y572 518 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 TACC3Q9Y6A5 838 aa11.42□□□□□ -0.58
COL6A3-205ENST00000392004 V9GYY5 206 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-205ENST00000392004 PDS5AQ29RF7 1337 aaKnown RBP11.42□□□□□ -0.58
COL6A3-205ENST00000392004 CRYBG1Q9Y4K1 1723 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 KIF2AO00139 706 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-205ENST00000392004 FOXP2O15409 715 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 EXOC3O60645 756 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 PLCG1P19174 1290 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 NAA30Q147X3 362 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-205ENST00000392004 GALNT17Q6IS24 598 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 ZBTB33Q86T24 672 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 GBP3Q9H0R5 595 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 PCIF1Q9H4Z3 704 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 MORC2Q9Y6X9 1032 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-205ENST00000392004 RGPD1P0DJD0 1748 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 C10orf71Q711Q0 1435 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 DLATP10515 647 aaKnown RBP11.41□□□□□ -0.58
COL6A3-205ENST00000392004 SKILP12757 684 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 KRT13P13646 458 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 KCNA4P22459 653 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 ERVK-9P63128 1117 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 ERVK-24P63145 666 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 SLC39A14Q15043 492 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 STX1AQ16623 288 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 FKBP15Q5T1M5 1219 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 LINC00301Q8NCQ3 95 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 PORCNQ9H237 461 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 TRMT1Q9NXH9 659 aaKnown RBP11.41□□□□□ -0.58
COL6A3-205ENST00000392004 TCHHQ07283 1943 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 CSDE1O75534 798 aaKnown RBP11.41□□□□□ -0.58
COL6A3-205ENST00000392004 TMOD1P28289 359 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 DSG3P32926 999 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 RESTQ13127 1097 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 CDR2LQ86X02 465 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-205ENST00000392004 CACTINQ8WUQ7 758 aaKnown RBP11.41□□□□□ -0.58
COL6A3-205ENST00000392004 FNBP1Q96RU3 617 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 MRIQ9BWK5 157 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 LRRC27Q9C0I9 530 aa11.41□□□□□ -0.58
COL6A3-205ENST00000392004 ZNHIT6Q9NWK9 470 aaKnown RBP11.41□□□□□ -0.58
COL6A3-205ENST00000392004 NWD2Q9ULI1 1742 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 COL1A1P02452 1464 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-205ENST00000392004 CLIC2O15247 247 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 CTAGE5O15320 804 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 YEATS4O95619 227 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 ICAM1P05362 532 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 POSTNQ15063 836 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 SLC9C1Q4G0N8 1177 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 FAM160B1Q5W0V3 765 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 MIS18BP1Q6P0N0 1132 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 TRIM50Q86XT4 487 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms