RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 UBR3Q6ZT12 1888 aa15.28■□□□□ 0.04
SDC1-202ENST00000381150 ROBO3Q96MS0 1386 aa15.28■□□□□ 0.04
SDC1-202ENST00000381150 PDE4DQ08499 809 aa15.28■□□□□ 0.04
SDC1-202ENST00000381150 PFKFB3Q16875 520 aaPredicted RBP15.28■□□□□ 0.04
SDC1-202ENST00000381150 HAUS3Q68CZ6 603 aa15.28■□□□□ 0.04
SDC1-202ENST00000381150 DZIP1Q86YF9 867 aaKnown RBP15.28■□□□□ 0.04
SDC1-202ENST00000381150 ANKIB1Q9P2G1 1089 aa15.28■□□□□ 0.04
SDC1-202ENST00000381150 PLAAQ9Y263 795 aa15.28■□□□□ 0.04
SDC1-202ENST00000381150 EP400Q96L91 3159 aa15.28■□□□□ 0.04
SDC1-202ENST00000381150 ZNF233A6NK53 670 aa15.28■□□□□ 0.04
SDC1-202ENST00000381150 KIF11P52732 1056 aa15.28■□□□□ 0.04
SDC1-202ENST00000381150 PPP1R7Q15435 360 aa15.28■□□□□ 0.04
SDC1-202ENST00000381150 PRR5LQ6MZQ0 368 aa15.28■□□□□ 0.04
SDC1-202ENST00000381150 DDX42Q86XP3 938 aaKnown RBP eCLIP15.28■□□□□ 0.04
SDC1-202ENST00000381150 CERKQ8TCT0 537 aa15.28■□□□□ 0.04
SDC1-202ENST00000381150 TCP11Q8WWU5 503 aa15.28■□□□□ 0.04
SDC1-202ENST00000381150 GJD4Q96KN9 370 aaPredicted RBP15.28■□□□□ 0.04
SDC1-202ENST00000381150 SPATA31A6Q5VVP1 1343 aa15.27■□□□□ 0.04
SDC1-202ENST00000381150 MYH8P13535 1937 aa15.27■□□□□ 0.04
SDC1-202ENST00000381150 LDHBP07195 334 aaKnown RBP15.27■□□□□ 0.04
SDC1-202ENST00000381150 CLTAP09496 248 aa15.27■□□□□ 0.04
SDC1-202ENST00000381150 SCG2P13521 617 aa15.27■□□□□ 0.04
SDC1-202ENST00000381150 DIXDC1Q155Q3 683 aa15.27■□□□□ 0.04
SDC1-202ENST00000381150 CRY2Q49AN0 593 aa15.27■□□□□ 0.04
SDC1-202ENST00000381150 EMBQ6PCB8 327 aa15.27■□□□□ 0.04
SDC1-202ENST00000381150 DGKHQ86XP1 1220 aa15.27■□□□□ 0.04
SDC1-202ENST00000381150 GPKOWQ92917 476 aaPredicted RBP eCLIP15.27■□□□□ 0.04
SDC1-202ENST00000381150 DYNLL2Q96FJ2 89 aa15.27■□□□□ 0.04
SDC1-202ENST00000381150 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.27■□□□□ 0.04
SDC1-202ENST00000381150 TSPY2A6NKD2 308 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 ZNF263O14978 683 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 PTGISQ16647 500 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 SLC35G1Q2M3R5 365 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 ALS2CLQ60I27 953 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 GPR101Q96P66 508 aaPredicted RBP15.27■□□□□ 0.03
SDC1-202ENST00000381150 GOLPH3Q9H4A6 298 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 KANSL2Q9H9L4 492 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 TLDC2A0PJX2 215 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 ATP2C1P98194 919 aaPredicted RBP15.27■□□□□ 0.03
SDC1-202ENST00000381150 TFAP4Q01664 338 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 MSL1Q68DK7 614 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 NAIF1Q69YI7 327 aaPredicted RBP15.27■□□□□ 0.03
SDC1-202ENST00000381150 DNAAF5Q86Y56 855 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 CNBD1Q8NA66 436 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 THOC1Q96FV9 657 aaKnown RBP15.27■□□□□ 0.03
SDC1-202ENST00000381150 DNAJC7Q99615 494 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 TACO1Q9BSH4 297 aaKnown RBP15.27■□□□□ 0.03
SDC1-202ENST00000381150 CCDC113Q9H0I3 377 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 SLC39A2Q9NP94 309 aa15.27■□□□□ 0.03
SDC1-202ENST00000381150 MDH1P40925 334 aaKnown RBP15.26■□□□□ 0.03
SDC1-202ENST00000381150 GPSM2P81274 684 aa15.26■□□□□ 0.03
SDC1-202ENST00000381150 ZBED6P86452 979 aa15.26■□□□□ 0.03
SDC1-202ENST00000381150 PAK2Q13177 524 aa15.26■□□□□ 0.03
SDC1-202ENST00000381150 CFAP221Q4G0U5 840 aa15.26■□□□□ 0.03
SDC1-202ENST00000381150 HIBCHQ6NVY1 386 aaPredicted RBP15.26■□□□□ 0.03
SDC1-202ENST00000381150 CCDC155Q8N6L0 562 aa15.26■□□□□ 0.03
SDC1-202ENST00000381150 UIMC1Q96RL1 719 aa15.26■□□□□ 0.03
SDC1-202ENST00000381150 GOPCQ9HD26 462 aa15.26■□□□□ 0.03
SDC1-202ENST00000381150 PHF20L1A8MW92 1017 aa15.26■□□□□ 0.03
SDC1-202ENST00000381150 CTNNA1P35221 906 aaKnown RBP15.26■□□□□ 0.03
SDC1-202ENST00000381150 FNTAP49354 379 aa15.26■□□□□ 0.03
SDC1-202ENST00000381150 MMP14P50281 582 aa15.26■□□□□ 0.03
SDC1-202ENST00000381150 IL17AQ16552 155 aa15.26■□□□□ 0.03
SDC1-202ENST00000381150 PARP9Q8IXQ6 854 aa15.26■□□□□ 0.03
SDC1-202ENST00000381150 GGT7Q9UJ14 662 aa15.26■□□□□ 0.03
SDC1-202ENST00000381150 LRRC10BA6NIK2 292 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 TMCO5BA8MYB1 307 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 GCOM1H8Y6P7 765 aaPredicted RBP15.25■□□□□ 0.03
SDC1-202ENST00000381150 MYZAPP0CAP1 466 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 FCER1AP12319 257 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 TCP1P17987 556 aaKnown RBP15.25■□□□□ 0.03
SDC1-202ENST00000381150 IFFO1Q0D2I5 559 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 STAG2Q8N3U4 1231 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 CYFIP2Q96F07 1278 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 TCP11L1Q9NUJ3 509 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 NAV1Q8NEY1 1877 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 ANO9A1A5B4 782 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 M0R2N6 131 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 BMP15O95972 392 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 NT5C2P49902 561 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 SPRED3Q2MJR0 410 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 CYB5D1Q6P9G0 228 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 PLCD4Q9BRC7 762 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 RTFDC1Q9BY42 306 aaPredicted RBP15.25■□□□□ 0.03
SDC1-202ENST00000381150 EPHB6O15197 1021 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 GYS1P13807 737 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 DTHD1Q6ZMT9 781 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 DYMQ7RTS9 669 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 TAX1BP1Q86VP1 789 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 C4orf32Q8N8J7 132 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 UHMK1Q8TAS1 419 aaKnown RBP15.25■□□□□ 0.03
SDC1-202ENST00000381150 CCDC47Q96A33 483 aaKnown RBP15.25■□□□□ 0.03
SDC1-202ENST00000381150 AP1M1Q9BXS5 423 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 TSGA10Q9BZW7 698 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 DDX20Q9UHI6 824 aaKnown RBP15.25■□□□□ 0.03
SDC1-202ENST00000381150 MAD2L2Q9UI95 211 aa15.25■□□□□ 0.03
SDC1-202ENST00000381150 NOVA2Q9UNW9 492 aaKnown RBP15.25■□□□□ 0.03
SDC1-202ENST00000381150 DDX60LQ5H9U9 1706 aaKnown RBP15.25■□□□□ 0.03
SDC1-202ENST00000381150 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.24■□□□□ 0.03
SDC1-202ENST00000381150 BUB1BO60566 1050 aaPredicted RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms