RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 PJA2O43164 708 aa20.38■□□□□ 0.85
CCDC3-201ENST00000378825 RAD51CO43502 376 aa20.38■□□□□ 0.85
CCDC3-201ENST00000378825 IBSPP21815 317 aaPredicted RBP20.38■□□□□ 0.85
CCDC3-201ENST00000378825 SPRED3Q2MJR0 410 aa20.38■□□□□ 0.85
CCDC3-201ENST00000378825 RNF187Q5TA31 235 aaPredicted RBP20.38■□□□□ 0.85
CCDC3-201ENST00000378825 IFT20Q8IY31 132 aa20.38■□□□□ 0.85
CCDC3-201ENST00000378825 PRPF38AQ8NAV1 312 aaKnown RBP20.38■□□□□ 0.85
CCDC3-201ENST00000378825 TBCKQ8TEA7 893 aa20.38■□□□□ 0.85
CCDC3-201ENST00000378825 C8orf37Q96NL8 207 aa20.38■□□□□ 0.85
CCDC3-201ENST00000378825 PNMA5Q96PV4 448 aa20.38■□□□□ 0.85
CCDC3-201ENST00000378825 AHDC1Q5TGY3 1603 aaPredicted RBP20.37■□□□□ 0.85
CCDC3-201ENST00000378825 NOL4O94818 638 aa20.37■□□□□ 0.85
CCDC3-201ENST00000378825 KDM7AQ6ZMT4 941 aa20.37■□□□□ 0.85
CCDC3-201ENST00000378825 FBXO33Q7Z6M2 555 aa20.37■□□□□ 0.85
CCDC3-201ENST00000378825 SETDB2Q96T68 719 aa20.37■□□□□ 0.85
CCDC3-201ENST00000378825 CD248Q9HCU0 757 aa20.37■□□□□ 0.85
CCDC3-201ENST00000378825 TBC1D7Q9P0N9 293 aa20.37■□□□□ 0.85
CCDC3-201ENST00000378825 COL22A1Q8NFW1 1626 aaPredicted RBP20.37■□□□□ 0.85
CCDC3-201ENST00000378825 HIBADHP31937 336 aaKnown RBP20.37■□□□□ 0.85
CCDC3-201ENST00000378825 PRPHP41219 470 aa20.37■□□□□ 0.85
CCDC3-201ENST00000378825 CEP85LQ5SZL2 805 aa20.37■□□□□ 0.85
CCDC3-201ENST00000378825 SWT1Q5T5J6 900 aaKnown RBP20.37■□□□□ 0.85
CCDC3-201ENST00000378825 USP17L2Q6R6M4 530 aa20.37■□□□□ 0.85
CCDC3-201ENST00000378825 MAATS1Q7Z4T9 603 aa20.37■□□□□ 0.85
CCDC3-201ENST00000378825 TBC1D5Q92609 795 aa20.37■□□□□ 0.85
CCDC3-201ENST00000378825 NLRP3Q96P20 1036 aa20.37■□□□□ 0.85
CCDC3-201ENST00000378825 EPN3Q9H201 632 aa20.37■□□□□ 0.85
CCDC3-201ENST00000378825 PPANQ9NQ55 473 aaKnown RBP20.37■□□□□ 0.85
CCDC3-201ENST00000378825 GOLGB1Q14789 3259 aaKnown RBP20.37■□□□□ 0.85
CCDC3-201ENST00000378825 SMCO2A6NFE2 343 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 IFT88Q13099 833 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 PTGISQ16647 500 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 BARGINQ6ZT62 677 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 CCT8L2Q96SF2 557 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 CEP89Q96ST8 783 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 TMEM47Q9BQJ4 181 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 ATP8A2Q9NTI2 1148 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 ARPP21Q9UBL0 812 aaPredicted RBP20.36■□□□□ 0.85
CCDC3-201ENST00000378825 SAP30BPQ9UHR5 308 aaKnown RBP20.36■□□□□ 0.85
CCDC3-201ENST00000378825 PLAAQ9Y263 795 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 A0A087X0T9 212 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 KLRF2D3W0D1 207 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 PPP1R37O75864 691 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 FAM228BP0C875 321 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 TNFRSF8P28908 595 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 POLR2FP61218 127 aaKnown RBP20.36■□□□□ 0.85
CCDC3-201ENST00000378825 MYCBPAPQ8TBZ2 947 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 JPH2Q9BR39 696 aaPredicted RBP20.36■□□□□ 0.85
CCDC3-201ENST00000378825 MKNK2Q9HBH9 465 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 LRRC4CQ9HCJ2 640 aa20.36■□□□□ 0.85
CCDC3-201ENST00000378825 SLC37A4O43826 429 aa20.35■□□□□ 0.85
CCDC3-201ENST00000378825 KIAA0754O94854 1291 aa20.35■□□□□ 0.85
CCDC3-201ENST00000378825 NONOQ15233 471 aaKnown RBP eCLIP20.35■□□□□ 0.85
CCDC3-201ENST00000378825 GRIK5Q16478 980 aa20.35■□□□□ 0.85
CCDC3-201ENST00000378825 SV2BQ7L1I2 683 aa20.35■□□□□ 0.85
CCDC3-201ENST00000378825 DAGLBQ8NCG7 672 aa20.35■□□□□ 0.85
CCDC3-201ENST00000378825 GPR101Q96P66 508 aaPredicted RBP20.35■□□□□ 0.85
CCDC3-201ENST00000378825 MYCBPQ99417 103 aaPredicted RBP20.35■□□□□ 0.85
CCDC3-201ENST00000378825 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.35■□□□□ 0.85
CCDC3-201ENST00000378825 CUEDC2Q9H467 287 aa20.35■□□□□ 0.85
CCDC3-201ENST00000378825 ADAMTS1Q9UHI8 967 aa20.35■□□□□ 0.85
CCDC3-201ENST00000378825 CASZ1Q86V15 1759 aa20.35■□□□□ 0.85
CCDC3-201ENST00000378825 EP400Q96L91 3159 aa20.35■□□□□ 0.85
CCDC3-201ENST00000378825 E7EVH7 732 aa20.35■□□□□ 0.85
CCDC3-201ENST00000378825 PAK2Q13177 524 aa20.35■□□□□ 0.85
CCDC3-201ENST00000378825 INPP4AQ96PE3 977 aaPredicted RBP20.35■□□□□ 0.85
CCDC3-201ENST00000378825 TSPY3P0CV98 308 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 TSPY8P0CW00 308 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 DIXDC1Q155Q3 683 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 ECM1Q16610 540 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 FAM83BQ5T0W9 1011 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 C12orf60Q5U649 245 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 CHADLQ6NUI6 762 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 NEK8Q86SG6 692 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 NLRP14Q86W24 1093 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 DGKHQ86XP1 1220 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 SH3RF3Q8TEJ3 882 aaPredicted RBP20.34■□□□□ 0.85
CCDC3-201ENST00000378825 AK8Q96MA6 479 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 NRAPQ86VF7 1730 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 LAD1O00515 517 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 TDP2O95551 362 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 ERVK-9P63128 1117 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 CACNB1Q02641 598 aaPredicted RBP20.34■□□□□ 0.85
CCDC3-201ENST00000378825 ITGB3BPQ13352 177 aaPredicted RBP20.34■□□□□ 0.85
CCDC3-201ENST00000378825 B4GALNT4Q76KP1 1039 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 CCDC84Q86UT8 332 aaPredicted RBP20.34■□□□□ 0.85
CCDC3-201ENST00000378825 ATP6V1G3Q96LB4 118 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 UBA5Q9GZZ9 404 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 ZMYND12Q9H0C1 365 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 KIAA1551Q9HCM1 1747 aa20.34■□□□□ 0.85
CCDC3-201ENST00000378825 TMOD1P28289 359 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 MDH1P40925 334 aaKnown RBP20.33■□□□□ 0.85
CCDC3-201ENST00000378825 HLTFQ14527 1009 aaKnown RBP eCLIP20.33■□□□□ 0.85
CCDC3-201ENST00000378825 SBK1Q52WX2 424 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 LARP4BQ92615 738 aaKnown RBP20.33■□□□□ 0.85
CCDC3-201ENST00000378825 RUBCNQ92622 972 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 DDX12PQ92771 950 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 CALML4Q96GE6 196 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 LSM14BQ9BX40 385 aaKnown RBP20.33■□□□□ 0.85
CCDC3-201ENST00000378825 NEUROG2Q9H2A3 272 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms