RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 TMTC2Q8N394 836 aa24.31■■□□□ 1.48
VSX1-201ENST00000376707 PPM1EQ8WY54 764 aa24.31■■□□□ 1.48
VSX1-201ENST00000376707 SLC9A7Q96T83 725 aa24.31■■□□□ 1.48
VSX1-201ENST00000376707 ESYT1Q9BSJ8 1104 aa24.31■■□□□ 1.48
VSX1-201ENST00000376707 SPZ1Q9BXG8 430 aa24.31■■□□□ 1.48
VSX1-201ENST00000376707 MLXIPQ9HAP2 919 aa24.31■■□□□ 1.48
VSX1-201ENST00000376707 CCDC69A6NI79 296 aa24.3■■□□□ 1.48
VSX1-201ENST00000376707 HAS3O00219 553 aa24.3■■□□□ 1.48
VSX1-201ENST00000376707 HOXD8P13378 290 aaPredicted RBP24.3■■□□□ 1.48
VSX1-201ENST00000376707 SP2Q02086 613 aa24.3■■□□□ 1.48
VSX1-201ENST00000376707 ADGRE1Q14246 886 aa24.3■■□□□ 1.48
VSX1-201ENST00000376707 GNPTABQ3T906 1256 aa24.3■■□□□ 1.48
VSX1-201ENST00000376707 LRRC8DQ7L1W4 858 aa24.3■■□□□ 1.48
VSX1-201ENST00000376707 DHX38Q92620 1227 aaKnown RBP24.3■■□□□ 1.48
VSX1-201ENST00000376707 TMEM87BQ96K49 555 aa24.3■■□□□ 1.48
VSX1-201ENST00000376707 LZTS2Q9BRK4 669 aa24.3■■□□□ 1.48
VSX1-201ENST00000376707 SEC63Q9UGP8 760 aaKnown RBP24.3■■□□□ 1.48
VSX1-201ENST00000376707 CUL9Q8IWT3 2517 aa24.3■■□□□ 1.48
VSX1-201ENST00000376707 SCN5AQ14524 2016 aa24.29■■□□□ 1.48
VSX1-201ENST00000376707 SLC27A2O14975 620 aa24.29■■□□□ 1.48
VSX1-201ENST00000376707 GNAQP50148 359 aa24.29■■□□□ 1.48
VSX1-201ENST00000376707 PHOSPHO2Q8TCD6 241 aa24.29■■□□□ 1.48
VSX1-201ENST00000376707 GPKOWQ92917 476 aaPredicted RBP eCLIP24.29■■□□□ 1.48
VSX1-201ENST00000376707 CUL5Q93034 780 aa24.29■■□□□ 1.48
VSX1-201ENST00000376707 TANC1Q9C0D5 1861 aa24.29■■□□□ 1.48
VSX1-201ENST00000376707 SH2B2O14492 632 aaPredicted RBP24.28■■□□□ 1.48
VSX1-201ENST00000376707 STAM2O75886 525 aa24.28■■□□□ 1.48
VSX1-201ENST00000376707 BAIAP3O94812 1187 aa24.28■■□□□ 1.48
VSX1-201ENST00000376707 PARNO95453 639 aaKnown RBP24.28■■□□□ 1.48
VSX1-201ENST00000376707 SMARCA1P28370 1054 aa24.28■■□□□ 1.48
VSX1-201ENST00000376707 RBL2Q08999 1139 aa24.28■■□□□ 1.48
VSX1-201ENST00000376707 PTK7Q13308 1070 aa24.28■■□□□ 1.48
VSX1-201ENST00000376707 SMARCC2Q8TAQ2 1214 aa24.28■■□□□ 1.48
VSX1-201ENST00000376707 ANO2Q9NQ90 1003 aa24.28■■□□□ 1.48
VSX1-201ENST00000376707 FRMPD4Q14CM0 1322 aa24.28■■□□□ 1.48
VSX1-201ENST00000376707 CA3P07451 260 aa24.27■■□□□ 1.48
VSX1-201ENST00000376707 CKBP12277 381 aa24.27■■□□□ 1.48
VSX1-201ENST00000376707 KCNJ6P48051 423 aa24.27■■□□□ 1.48
VSX1-201ENST00000376707 CREB3L3Q68CJ9 461 aa24.27■■□□□ 1.48
VSX1-201ENST00000376707 BAZ2BQ9UIF8 2168 aaKnown RBP24.26■■□□□ 1.47
VSX1-201ENST00000376707 GBF1Q92538 1859 aa24.26■■□□□ 1.47
VSX1-201ENST00000376707 KIF28PB7ZC32 967 aa24.26■■□□□ 1.47
VSX1-201ENST00000376707 NOP56O00567 594 aaKnown RBP24.26■■□□□ 1.47
VSX1-201ENST00000376707 PLEKHA8P1O95397 391 aa24.26■■□□□ 1.47
VSX1-201ENST00000376707 CALM1P0DP23 149 aa24.26■■□□□ 1.47
VSX1-201ENST00000376707 CALM2P0DP24 149 aa24.26■■□□□ 1.47
VSX1-201ENST00000376707 CALM3P0DP25 149 aa24.26■■□□□ 1.47
VSX1-201ENST00000376707 MRPS9P82933 396 aaKnown RBP24.26■■□□□ 1.47
VSX1-201ENST00000376707 HERC6Q8IVU3 1022 aa24.26■■□□□ 1.47
VSX1-201ENST00000376707 INPP4AQ96PE3 977 aaPredicted RBP24.26■■□□□ 1.47
VSX1-201ENST00000376707 RTEL1Q9NZ71 1219 aa24.26■■□□□ 1.47
VSX1-201ENST00000376707 FIBPO43427 364 aa24.25■■□□□ 1.47
VSX1-201ENST00000376707 RXRAP19793 462 aa24.25■■□□□ 1.47
VSX1-201ENST00000376707 ICAM3P32942 547 aa24.25■■□□□ 1.47
VSX1-201ENST00000376707 LIFRP42702 1097 aa24.25■■□□□ 1.47
VSX1-201ENST00000376707 ZNF200P98182 395 aaPredicted RBP24.25■■□□□ 1.47
VSX1-201ENST00000376707 NEDD9Q14511 834 aa24.25■■□□□ 1.47
VSX1-201ENST00000376707 NECTIN1Q15223 517 aa24.25■■□□□ 1.47
VSX1-201ENST00000376707 CCDC85BQ15834 202 aaPredicted RBP24.25■■□□□ 1.47
VSX1-201ENST00000376707 USP17L6PQ6QN14 398 aa24.25■■□□□ 1.47
VSX1-201ENST00000376707 SKAP1Q86WV1 359 aa24.25■■□□□ 1.47
VSX1-201ENST00000376707 SRBD1Q8N5C6 995 aaKnown RBP24.25■■□□□ 1.47
VSX1-201ENST00000376707 SYMPKQ92797 1274 aaKnown RBP24.25■■□□□ 1.47
VSX1-201ENST00000376707 C16orf70Q9BSU1 422 aa24.25■■□□□ 1.47
VSX1-201ENST00000376707 SLC12A7Q9Y666 1083 aa24.25■■□□□ 1.47
VSX1-201ENST00000376707 CHD9Q3L8U1 2897 aa24.24■■□□□ 1.47
VSX1-201ENST00000376707 SPATA31C2B4DYI2 1134 aa24.24■■□□□ 1.47
VSX1-201ENST00000376707 GPNMBQ14956 572 aa24.24■■□□□ 1.47
VSX1-201ENST00000376707 CNKSR3Q6P9H4 555 aa24.24■■□□□ 1.47
VSX1-201ENST00000376707 CMTR1Q8N1G2 835 aaKnown RBP24.24■■□□□ 1.47
VSX1-201ENST00000376707 BCAS3Q9H6U6 928 aa24.24■■□□□ 1.47
VSX1-201ENST00000376707 PRDM6Q9NQX0 595 aa24.24■■□□□ 1.47
VSX1-201ENST00000376707 PRUNE2Q8WUY3 3088 aa24.24■■□□□ 1.47
VSX1-201ENST00000376707 H3BRB1 525 aa24.23■■□□□ 1.47
VSX1-201ENST00000376707 PIK3CDO00329 1044 aa24.23■■□□□ 1.47
VSX1-201ENST00000376707 NBNO60934 754 aa24.23■■□□□ 1.47
VSX1-201ENST00000376707 CXCL10P02778 98 aa24.23■■□□□ 1.47
VSX1-201ENST00000376707 LGALS2P05162 132 aa24.23■■□□□ 1.47
VSX1-201ENST00000376707 WDR5P61964 334 aaKnown RBP24.23■■□□□ 1.47
VSX1-201ENST00000376707 COL9A3Q14050 684 aaPredicted RBP24.23■■□□□ 1.47
VSX1-201ENST00000376707 PCNX4Q63HM2 1172 aa24.23■■□□□ 1.47
VSX1-201ENST00000376707 XRRA1Q6P2D8 792 aa24.23■■□□□ 1.47
VSX1-201ENST00000376707 METTL7BQ6UX53 244 aa24.23■■□□□ 1.47
VSX1-201ENST00000376707 CYFIP1Q7L576 1253 aa24.23■■□□□ 1.47
VSX1-201ENST00000376707 RAB11FIP4Q86YS3 637 aa24.23■■□□□ 1.47
VSX1-201ENST00000376707 LRRC2Q9BYS8 371 aa24.23■■□□□ 1.47
VSX1-201ENST00000376707 TUT1Q9H6E5 874 aaKnown RBP24.23■■□□□ 1.47
VSX1-201ENST00000376707 C17orf102A2RUQ5 167 aa24.22■■□□□ 1.47
VSX1-201ENST00000376707 MEIS2O14770 477 aa24.22■■□□□ 1.47
VSX1-201ENST00000376707 HIC1Q14526 733 aa24.22■■□□□ 1.47
VSX1-201ENST00000376707 TRIM71Q2Q1W2 868 aaKnown RBP24.22■■□□□ 1.47
VSX1-201ENST00000376707 TJAP1Q5JTD0 557 aa24.22■■□□□ 1.47
VSX1-201ENST00000376707 ZNF618Q5T7W0 954 aa24.22■■□□□ 1.47
VSX1-201ENST00000376707 RNF20Q5VTR2 975 aa24.22■■□□□ 1.47
VSX1-201ENST00000376707 WNT8BQ93098 351 aa24.22■■□□□ 1.47
VSX1-201ENST00000376707 USP26Q9BXU7 913 aa24.22■■□□□ 1.47
VSX1-201ENST00000376707 CERS4Q9HA82 394 aa24.22■■□□□ 1.47
VSX1-201ENST00000376707 THEGQ9P2T0 379 aa24.22■■□□□ 1.47
VSX1-201ENST00000376707 MYH7BA7E2Y1 1941 aa24.22■■□□□ 1.47
VSX1-201ENST00000376707 TLL1O43897 1013 aa24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms