RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ST13P4Q8IZP2 240 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ZGPATQ8N5A5 531 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ANKRD42Q8N9B4 389 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 SYMPKQ92797 1274 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 CCDC42Q96M95 316 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 RBM7Q9Y580 266 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ARHGEF35A5YM69 484 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ADCY6O43306 1168 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ACTN4O43707 911 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ZFXP17010 805 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 IARSP41252 1262 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 MAGEA1P43355 309 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 APBA1Q02410 837 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ART3Q13508 389 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 SPARCL1Q14515 664 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 RASIP1Q5U651 963 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ARHGAP17Q68EM7 881 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 DENND6AQ8IWF6 608 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 SYT2Q8N9I0 419 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 TRIM63Q969Q1 353 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 IDI2Q9BXS1 227 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 SUGCTQ9HAC7 445 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 HPCAL4Q9UM19 191 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 GOLGA8TH3BQL2 631 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 PSMA7O14818 248 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 PDE9AO76083 593 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 BCL10O95999 233 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 RHOXF2BP0C7M4 288 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 FAM69CQ0P6D2 419 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 TP53BP2Q13625 1128 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 MARK2Q7KZI7 788 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 CCNYQ8ND76 341 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 MTBPQ96DY7 904 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 NUDCD1Q96RS6 583 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 RHOXF2Q9BQY4 288 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 MARK1Q9P0L2 795 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 WARS2Q9UGM6 360 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 PHF8Q9UPP1 1060 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 DTNAQ9Y4J8 743 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 TMEM191CA6NGB0 347 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 KRT86O43790 486 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 TOMM70O94826 608 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 LCA5LO95447 670 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 TMEM191BP0C7N4 346 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 VAV2P52735 878 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 MED21Q13503 144 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 CHRNA2Q15822 529 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 KRT79Q5XKE5 535 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ATG16L1Q676U5 607 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 PACS2Q86VP3 889 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 FAM9CQ8IZT9 166 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 CLYBLQ8N0X4 340 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 CNBD1Q8NA66 436 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ECT2Q9H8V3 914 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 MAP3K20Q9NYL2 800 aaKnown RBP5.01□□□□□ -1.61
SCN1A-202ENST00000375405 FBXL21Q9UKT6 434 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 ARHGAP26Q9UNA1 814 aa5.01□□□□□ -1.61
SCN1A-202ENST00000375405 FAM47DPA6NHR8 397 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 ZBED4O75132 1171 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 PGM3O95394 542 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 PARP1P09874 1014 aaKnown RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 EEF1GP26641 437 aaKnown RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 PPP3CCP48454 512 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 UBASH3AP57075 661 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 MMRN1Q13201 1228 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 LPIN1Q14693 890 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 NAA30Q147X3 362 aaPredicted RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 ZMYND11Q15326 602 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 GRAMD4Q6IC98 578 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 GIMAP6Q6P9H5 292 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 TRMT44Q8IYL2 757 aaKnown RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 GIPC2Q8TF65 315 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 ATP11BQ9Y2G3 1177 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 IL16Q14005 1332 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 MAP3K15Q6ZN16 1313 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 PPP6R2O75170 966 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 TRIM3O75382 744 aaPredicted RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 BTN3A2P78410 334 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 RINT1Q6NUQ1 792 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 CCDC84Q86UT8 332 aaPredicted RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 RETREG2Q8NC44 543 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 CSRNP1Q96S65 589 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 NSFL1CQ9UNZ2 370 aaKnown RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 EXOC7Q9UPT5 735 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 TIMM8BQ9Y5J9 83 aaPredicted RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 ADCY3O60266 1144 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 DEAF1O75398 565 aaPredicted RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 TROVE2P10155 538 aaKnown RBP eCLIP5□□□□□ -1.61
SCN1A-202ENST00000375405 GRSF1Q12849 480 aaKnown RBP eCLIP5□□□□□ -1.61
SCN1A-202ENST00000375405 GPIHBP1Q8IV16 184 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 STAG1Q8WVM7 1258 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 ELAC2Q9BQ52 826 aaKnown RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 MOV10L1Q9BXT6 1211 aaKnown RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 TRIM4Q9C037 500 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 ING2Q9H160 280 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 PA2G4Q9UQ80 394 aaKnown RBP5□□□□□ -1.61
SCN1A-202ENST00000375405 LZTS1Q9Y250 596 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 AATKQ6ZMQ8 1374 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 PPP2R1AP30153 589 aa5□□□□□ -1.61
SCN1A-202ENST00000375405 WTAPQ15007 396 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms