RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 LIG3P49916 1009 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 PDCLQ13371 301 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 MYOCDQ8IZQ8 938 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 FNBP4Q8N3X1 1017 aaPredicted RBP13.41□□□□□ -0.26
CLIP3-201ENST00000360535 SPZ1Q9BXG8 430 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 PANK4Q9NVE7 773 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 NARFQ9UHQ1 456 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 KIAA1024Q9UPX6 916 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 CASZ1Q86V15 1759 aa13.41□□□□□ -0.26
CLIP3-201ENST00000360535 TM4SF1P30408 202 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 AARSP49588 968 aaKnown RBP eCLIP13.4□□□□□ -0.26
CLIP3-201ENST00000360535 SLC10A5Q5PT55 438 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 CCDC43Q96MW1 224 aaKnown RBP13.4□□□□□ -0.26
CLIP3-201ENST00000360535 CAPS2Q9BXY5 557 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 RAB34Q9BZG1 259 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 CCNL1Q9UK58 526 aaPredicted RBP13.4□□□□□ -0.26
CLIP3-201ENST00000360535 PPFIA4O75335 1185 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 FGFR1OPO95684 399 aaKnown RBP13.4□□□□□ -0.26
CLIP3-201ENST00000360535 FAM153BP0C7A2 387 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 SNAP25P60880 206 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 HLTFQ14527 1009 aaKnown RBP eCLIP13.4□□□□□ -0.26
CLIP3-201ENST00000360535 KIAA0753Q2KHM9 967 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 FAM153CQ494X1 144 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 SFMBT2Q5VUG0 894 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 ZSCAN29Q8IWY8 852 aaPredicted RBP13.4□□□□□ -0.26
CLIP3-201ENST00000360535 RAD54LQ92698 747 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 RPGRQ92834 1020 aaKnown RBP13.4□□□□□ -0.26
CLIP3-201ENST00000360535 LZTS2Q9BRK4 669 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 TLR10Q9BXR5 811 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 RTFDC1Q9BY42 306 aaPredicted RBP13.4□□□□□ -0.26
CLIP3-201ENST00000360535 STIM2Q9P246 746 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 FAM153AQ9UHL3 310 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 ZC3H4Q9UPT8 1303 aaKnown RBP13.4□□□□□ -0.26
CLIP3-201ENST00000360535 USP17L15C9J2P7 530 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 USP17L13C9JLJ4 530 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 USP17L11C9JVI0 530 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 USP17L18D6R9N7 530 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 USP17L22D6RA61 530 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 USP17L17D6RBQ6 530 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 USP17L19D6RCP7 530 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 USP17L20D6RJB6 530 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 HEXIM1O94992 359 aaKnown RBP13.4□□□□□ -0.26
CLIP3-201ENST00000360535 GLI1P08151 1106 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 ACTN1P12814 892 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 AKR1B1P15121 316 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 TCP1P17987 556 aaKnown RBP13.4□□□□□ -0.26
CLIP3-201ENST00000360535 STAT3P40763 770 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 IRAK1P51617 712 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 GPSM2P81274 684 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 USP17L24Q0WX57 530 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 KCNMA1Q12791 1236 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 COASYQ13057 564 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 SLC9C1Q4G0N8 1177 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 FAM83BQ5T0W9 1011 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 TCERG1LQ5VWI1 586 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 HAUS3Q68CZ6 603 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 USP17L6PQ6QN14 398 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 NEDD1Q8NHV4 660 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 CDCA7Q9BWT1 371 aaPredicted RBP13.4□□□□□ -0.26
CLIP3-201ENST00000360535 MAGEF1Q9HAY2 307 aa13.4□□□□□ -0.26
CLIP3-201ENST00000360535 DDX25Q9UHL0 483 aaKnown RBP13.4□□□□□ -0.26
CLIP3-201ENST00000360535 MEIS1O00470 390 aa13.39□□□□□ -0.27
CLIP3-201ENST00000360535 PDHBP11177 359 aa13.39□□□□□ -0.27
CLIP3-201ENST00000360535 KLRC1P26715 233 aa13.39□□□□□ -0.27
CLIP3-201ENST00000360535 FAM26FQ5R3K3 315 aa13.39□□□□□ -0.27
CLIP3-201ENST00000360535 PDXDC1Q6P996 788 aa13.39□□□□□ -0.27
CLIP3-201ENST00000360535 AENQ8WTP8 325 aaKnown RBP13.39□□□□□ -0.27
CLIP3-201ENST00000360535 PURBQ96QR8 312 aaKnown RBP13.39□□□□□ -0.27
CLIP3-201ENST00000360535 CD209Q9NNX6 404 aa13.39□□□□□ -0.27
CLIP3-201ENST00000360535 BMP2KQ9NSY1 1161 aaPredicted RBP13.39□□□□□ -0.27
CLIP3-201ENST00000360535 PCDHA12Q9UN75 941 aa13.39□□□□□ -0.27
CLIP3-201ENST00000360535 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.39□□□□□ -0.27
CLIP3-201ENST00000360535 FAM196BA6NMK8 535 aa13.39□□□□□ -0.27
CLIP3-201ENST00000360535 GTF2IP78347 998 aa13.39□□□□□ -0.27
CLIP3-201ENST00000360535 KLHDC7AQ5VTJ3 777 aa13.39□□□□□ -0.27
CLIP3-201ENST00000360535 SAMD1Q6SPF0 538 aaPredicted RBP13.39□□□□□ -0.27
CLIP3-201ENST00000360535 BAP1Q92560 729 aa13.39□□□□□ -0.27
CLIP3-201ENST00000360535 ANKS1AQ92625 1134 aa13.39□□□□□ -0.27
CLIP3-201ENST00000360535 MXD3Q9BW11 206 aa13.39□□□□□ -0.27
CLIP3-201ENST00000360535 A0A1W2PQJ5 194 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 POTEB3A0JP26 581 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 POTECB2RU33 542 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 SCNN1DP51172 638 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 KLHL30Q0D2K2 578 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 TTC31Q49AM3 519 aaPredicted RBP13.38□□□□□ -0.27
CLIP3-201ENST00000360535 POTEBQ6S5H4 581 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 MAATS1Q7Z4T9 603 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 GUF1Q8N442 669 aaKnown RBP13.38□□□□□ -0.27
CLIP3-201ENST00000360535 CNBD1Q8NA66 436 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 COL4A3BPQ9Y5P4 624 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 CFAP221Q4G0U5 840 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 DCAF17Q5H9S7 520 aaPredicted RBP13.38□□□□□ -0.27
CLIP3-201ENST00000360535 PACS2Q86VP3 889 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 MMGT1Q8N4V1 131 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 C8orf37Q96NL8 207 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 ZIM3Q96PE6 472 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 A0A087X0T9 212 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 TMCO5BA8MYB1 307 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 USP17L10C9JJH3 530 aa13.38□□□□□ -0.27
CLIP3-201ENST00000360535 FAM228BP0C875 321 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms