RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 ALDH1A1P00352 501 aa22.45■■□□□ 1.18
CLN3-205ENST00000359984 ADORA2AP29274 412 aa22.45■■□□□ 1.18
CLN3-205ENST00000359984 PLEKHH3Q7Z736 793 aa22.45■■□□□ 1.18
CLN3-205ENST00000359984 SLC5A5Q92911 643 aa22.45■■□□□ 1.18
CLN3-205ENST00000359984 KCNH7Q9NS40 1196 aa22.45■■□□□ 1.18
CLN3-205ENST00000359984 POTEMA6NI47 508 aa22.44■■□□□ 1.18
CLN3-205ENST00000359984 EDNRBP24530 442 aa22.44■■□□□ 1.18
CLN3-205ENST00000359984 VEGFBP49765 207 aa22.44■■□□□ 1.18
CLN3-205ENST00000359984 CCDC183Q5T5S1 534 aa22.44■■□□□ 1.18
CLN3-205ENST00000359984 SYAP1Q96A49 352 aaPredicted RBP22.44■■□□□ 1.18
CLN3-205ENST00000359984 INPP4AQ96PE3 977 aaPredicted RBP22.44■■□□□ 1.18
CLN3-205ENST00000359984 ZNF577Q9BSK1 485 aa22.44■■□□□ 1.18
CLN3-205ENST00000359984 RAB34Q9BZG1 259 aa22.44■■□□□ 1.18
CLN3-205ENST00000359984 LRWD1Q9UFC0 647 aa22.44■■□□□ 1.18
CLN3-205ENST00000359984 A0A087X0B3 334 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 POLR2DO15514 142 aaKnown RBP22.43■■□□□ 1.18
CLN3-205ENST00000359984 COBLO75128 1261 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 RGS20O76081 388 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 MTMR1Q13613 665 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 STXBP2Q15833 593 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 PDILTQ8N807 584 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 CCSER1Q9C0I3 900 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 AGO4Q9HCK5 861 aaKnown RBP22.43■■□□□ 1.18
CLN3-205ENST00000359984 KINO60870 393 aaKnown RBP22.43■■□□□ 1.18
CLN3-205ENST00000359984 PSMD10O75832 226 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 STAM2O75886 525 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 UBA7P41226 1012 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 SPIRE1Q08AE8 756 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 GRB14Q14449 540 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 CLSTN2Q9H4D0 955 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 VAV3Q9UKW4 847 aa22.43■■□□□ 1.18
CLN3-205ENST00000359984 IPO5O00410 1097 aaKnown RBP22.42■■□□□ 1.18
CLN3-205ENST00000359984 EIF3JO75822 258 aaKnown RBP22.42■■□□□ 1.18
CLN3-205ENST00000359984 ZNF792Q3KQV3 632 aa22.42■■□□□ 1.18
CLN3-205ENST00000359984 LRCH2Q5VUJ6 765 aa22.42■■□□□ 1.18
CLN3-205ENST00000359984 NLRX1Q86UT6 975 aa22.42■■□□□ 1.18
CLN3-205ENST00000359984 GPRASP2Q96D09 838 aa22.42■■□□□ 1.18
CLN3-205ENST00000359984 MMTAG2Q9BU76 263 aaKnown RBP22.42■■□□□ 1.18
CLN3-205ENST00000359984 NUP62CLQ9H1M0 184 aa22.42■■□□□ 1.18
CLN3-205ENST00000359984 ZNFX1Q9P2E3 1918 aaKnown RBP22.42■■□□□ 1.18
CLN3-205ENST00000359984 TXLNAP40222 546 aa22.41■■□□□ 1.18
CLN3-205ENST00000359984 PDE4DQ08499 809 aa22.41■■□□□ 1.18
CLN3-205ENST00000359984 CAMK4Q16566 473 aa22.41■■□□□ 1.18
CLN3-205ENST00000359984 LONRF3Q496Y0 759 aa22.41■■□□□ 1.18
CLN3-205ENST00000359984 CABP7Q86V35 215 aa22.41■■□□□ 1.18
CLN3-205ENST00000359984 PLXNB2O15031 1838 aa22.41■■□□□ 1.18
CLN3-205ENST00000359984 SLC15A5A6NIM6 579 aa22.41■■□□□ 1.18
CLN3-205ENST00000359984 B4DLN1 442 aa22.41■■□□□ 1.18
CLN3-205ENST00000359984 ECM2O94769 699 aaPredicted RBP22.41■■□□□ 1.18
CLN3-205ENST00000359984 MAP2K2P36507 400 aa22.41■■□□□ 1.18
CLN3-205ENST00000359984 SEMA3FQ13275 785 aa22.41■■□□□ 1.18
CLN3-205ENST00000359984 ZSCAN23Q3MJ62 389 aa22.41■■□□□ 1.18
CLN3-205ENST00000359984 RIT2Q99578 217 aa22.41■■□□□ 1.18
CLN3-205ENST00000359984 PKD2L1Q9P0L9 805 aa22.41■■□□□ 1.18
CLN3-205ENST00000359984 GAS7O60861 476 aa22.4■■□□□ 1.18
CLN3-205ENST00000359984 ITGB3BPQ13352 177 aaPredicted RBP22.4■■□□□ 1.18
CLN3-205ENST00000359984 KARSQ15046 597 aaKnown RBP22.4■■□□□ 1.18
CLN3-205ENST00000359984 OTOP1Q7RTM1 612 aa22.4■■□□□ 1.18
CLN3-205ENST00000359984 TIGD1Q96MW7 591 aa22.4■■□□□ 1.18
CLN3-205ENST00000359984 LOC102724159A0A0B4J2E5 919 aa22.39■■□□□ 1.18
CLN3-205ENST00000359984 ATP9AO75110 1047 aa22.39■■□□□ 1.18
CLN3-205ENST00000359984 PWP2Q15269 919 aaKnown RBP22.39■■□□□ 1.18
CLN3-205ENST00000359984 GNPTABQ3T906 1256 aa22.39■■□□□ 1.18
CLN3-205ENST00000359984 DPP9Q86TI2 863 aa22.39■■□□□ 1.18
CLN3-205ENST00000359984 MORC4Q8TE76 937 aa22.39■■□□□ 1.18
CLN3-205ENST00000359984 DHX58Q96C10 678 aa22.39■■□□□ 1.18
CLN3-205ENST00000359984 MPHOSPH6Q99547 160 aaKnown RBP22.39■■□□□ 1.18
CLN3-205ENST00000359984 NUDT12Q9BQG2 462 aa22.39■■□□□ 1.18
CLN3-205ENST00000359984 SERTAD1Q9UHV2 236 aa22.39■■□□□ 1.18
CLN3-205ENST00000359984 MAFGO15525 162 aa22.39■■□□□ 1.17
CLN3-205ENST00000359984 DHX15O43143 795 aaKnown RBP22.39■■□□□ 1.17
CLN3-205ENST00000359984 MORN1Q5T089 497 aa22.39■■□□□ 1.17
CLN3-205ENST00000359984 NCAPH2Q6IBW4 605 aa22.39■■□□□ 1.17
CLN3-205ENST00000359984 KRBA2Q6ZNG9 492 aa22.39■■□□□ 1.17
CLN3-205ENST00000359984 SDF4Q9BRK5 362 aa22.39■■□□□ 1.17
CLN3-205ENST00000359984 TNMDQ9H2S6 317 aa22.39■■□□□ 1.17
CLN3-205ENST00000359984 ASB14A6NK59 587 aa22.38■■□□□ 1.17
CLN3-205ENST00000359984 SPATA31C2B4DYI2 1134 aa22.38■■□□□ 1.17
CLN3-205ENST00000359984 ACTN4O43707 911 aaKnown RBP22.38■■□□□ 1.17
CLN3-205ENST00000359984 PPP2R5CQ13362 524 aa22.38■■□□□ 1.17
CLN3-205ENST00000359984 ZRSR1Q15695 479 aaKnown RBP22.38■■□□□ 1.17
CLN3-205ENST00000359984 E2F4Q16254 413 aa22.38■■□□□ 1.17
CLN3-205ENST00000359984 KRT79Q5XKE5 535 aa22.38■■□□□ 1.17
CLN3-205ENST00000359984 B3GNT9Q6UX72 402 aa22.38■■□□□ 1.17
CLN3-205ENST00000359984 SNX29Q8TEQ0 813 aa22.38■■□□□ 1.17
CLN3-205ENST00000359984 CDHR1Q96JP9 859 aa22.38■■□□□ 1.17
CLN3-205ENST00000359984 TEKT3Q9BXF9 490 aa22.38■■□□□ 1.17
CLN3-205ENST00000359984 DISC1Q9NRI5 854 aa22.38■■□□□ 1.17
CLN3-205ENST00000359984 EML1O00423 815 aa22.37■■□□□ 1.17
CLN3-205ENST00000359984 TBC1D8O95759 1140 aa22.37■■□□□ 1.17
CLN3-205ENST00000359984 IQUBQ8NA54 791 aa22.37■■□□□ 1.17
CLN3-205ENST00000359984 CNNM3Q8NE01 707 aa22.37■■□□□ 1.17
CLN3-205ENST00000359984 PLIN2Q99541 437 aa22.37■■□□□ 1.17
CLN3-205ENST00000359984 UNC45AQ9H3U1 944 aa22.37■■□□□ 1.17
CLN3-205ENST00000359984 TBC1D22BQ9NU19 505 aa22.37■■□□□ 1.17
CLN3-205ENST00000359984 CCDC39Q9UFE4 941 aa22.37■■□□□ 1.17
CLN3-205ENST00000359984 DIS3Q9Y2L1 958 aaKnown RBP22.37■■□□□ 1.17
CLN3-205ENST00000359984 ICAM3P32942 547 aa22.37■■□□□ 1.17
CLN3-205ENST00000359984 RRAGBQ5VZM2 374 aa22.37■■□□□ 1.17
CLN3-205ENST00000359984 SEPT14Q6ZU15 432 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms