RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 XPNPEP3Q9NQH7 507 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 BECN2A8MW95 431 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 STXBP3O00186 592 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 XKR9Q5GH70 373 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 NIPA1Q7RTP0 329 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 KCTD17Q8N5Z5 321 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 DEPTORQ8TB45 409 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 NACC1Q96RE7 527 aa10.3□□□□□ -0.76
UPF2-202ENST00000357604 TRIM6Q9C030 488 aaPredicted RBP10.3□□□□□ -0.76
UPF2-202ENST00000357604 FTOQ9C0B1 505 aaKnown RBP eCLIP10.3□□□□□ -0.762e-8■■□□□ 13.3
UPF2-202ENST00000357604 DDX49Q9Y6V7 483 aaKnown RBP10.3□□□□□ -0.76
UPF2-202ENST00000357604 MOXD1Q6UVY6 613 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 TPH2Q8IWU9 490 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 STARD7Q9NQZ5 370 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 C17orf102A2RUQ5 167 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 PES1O00541 588 aaKnown RBP10.29□□□□□ -0.76
UPF2-202ENST00000357604 PPFIA3O75145 1194 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 FLT3LGP49771 235 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 RPS6P62753 249 aaKnown RBP10.29□□□□□ -0.76
UPF2-202ENST00000357604 CABP7Q86V35 215 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 IQUBQ8NA54 791 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 ZNF296Q8WUU4 475 aaPredicted RBP10.29□□□□□ -0.76
UPF2-202ENST00000357604 SLC7A3Q8WY07 619 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 MXRA8Q9BRK3 442 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 PRDM5Q9NQX1 630 aaPredicted RBP10.29□□□□□ -0.76
UPF2-202ENST00000357604 FBXO28Q9NVF7 368 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 CHGBP05060 677 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 TMEM132BQ14DG7 1078 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 PDXDC2PQ6P474 469 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 TSKSQ9UJT2 592 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 AKT3Q9Y243 479 aa10.29□□□□□ -0.76
UPF2-202ENST00000357604 A0A0U1RQG5 324 aaPredicted RBP10.28□□□□□ -0.76
UPF2-202ENST00000357604 PXYLP1Q8TE99 480 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 ZNF384Q8TF68 577 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 SEPT1Q8WYJ6 367 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 PCMTD1Q96MG8 357 aaPredicted RBP10.28□□□□□ -0.76
UPF2-202ENST00000357604 POTECB2RU33 542 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 PRKAR2AP13861 404 aaKnown RBP10.28□□□□□ -0.76
UPF2-202ENST00000357604 TBC1D8BQ0IIM8 1120 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 CEP55Q53EZ4 464 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 FAM114A1Q8IWE2 563 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 TAAR1Q96RJ0 339 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 CUEDC2Q9H467 287 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 VWA3AA6NCI4 1184 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 PGK2P07205 417 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 KCNJ6P48051 423 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 IGBP1P78318 339 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 DHX8Q14562 1220 aaKnown RBP10.28□□□□□ -0.76
UPF2-202ENST00000357604 MAGEB2O15479 319 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 GGPS1O95749 300 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 SLC26A2P50443 739 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 GNASQ5JWF2 1037 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 SPOUT1Q5T280 376 aaKnown RBP10.28□□□□□ -0.76
UPF2-202ENST00000357604 SMARCE1Q969G3 411 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 ADPGKQ9BRR6 497 aa10.28□□□□□ -0.76
UPF2-202ENST00000357604 DOCK2Q92608 1830 aa10.27□□□□□ -0.76
UPF2-202ENST00000357604 SORBS3O60504 671 aa10.27□□□□□ -0.76
UPF2-202ENST00000357604 ERLIN2O94905 339 aa10.27□□□□□ -0.76
UPF2-202ENST00000357604 CETN1Q12798 172 aa10.27□□□□□ -0.76
UPF2-202ENST00000357604 USP17L6PQ6QN14 398 aa10.27□□□□□ -0.76
UPF2-202ENST00000357604 FSIP1Q8NA03 581 aa10.27□□□□□ -0.76
UPF2-202ENST00000357604 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.27□□□□□ -0.76
UPF2-202ENST00000357604 TIPINQ9BVW5 301 aa10.27□□□□□ -0.76
UPF2-202ENST00000357604 ZMYND12Q9H0C1 365 aa10.27□□□□□ -0.76
UPF2-202ENST00000357604 ZSWIM4Q9H7M6 989 aa10.27□□□□□ -0.76
UPF2-202ENST00000357604 DDX20Q9UHI6 824 aaKnown RBP10.27□□□□□ -0.76
UPF2-202ENST00000357604 ELP1O95163 1332 aa10.27□□□□□ -0.76
UPF2-202ENST00000357604 RPTORQ8N122 1335 aa10.27□□□□□ -0.76
UPF2-202ENST00000357604 JAK2O60674 1132 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 SCP2P22307 547 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 CDC27P30260 824 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 TROAPQ12815 778 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 DMP1Q13316 513 aaPredicted RBP10.27□□□□□ -0.77
UPF2-202ENST00000357604 ARL6IP4Q66PJ3 421 aaKnown RBP10.27□□□□□ -0.77
UPF2-202ENST00000357604 FBXO18Q8NFZ0 1043 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 SYTL5Q8TDW5 730 aaPredicted RBP10.27□□□□□ -0.77
UPF2-202ENST00000357604 DNAJC18Q9H819 358 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 FAM102BQ5T8I3 360 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 MRPS27Q92552 414 aaKnown RBP10.27□□□□□ -0.77
UPF2-202ENST00000357604 RIT2Q99578 217 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 TNMDQ9H2S6 317 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 ATP6V0A4Q9HBG4 840 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 ERAP1Q9NZ08 941 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 INHAP05111 366 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 PSMC5P62195 406 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 FILIP1LQ4L180 1135 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 DRC1Q96MC2 740 aa10.27□□□□□ -0.77
UPF2-202ENST00000357604 FAM193BQ96PV7 902 aaPredicted RBP10.27□□□□□ -0.77
UPF2-202ENST00000357604 YEATS4O95619 227 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 SNHG28P0DPA3 235 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 RFC5P40937 340 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 SYKP43405 635 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 YARSP54577 528 aaKnown RBP10.26□□□□□ -0.77
UPF2-202ENST00000357604 PGM5Q15124 567 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 ZNF484Q5JVG2 852 aa10.26□□□□□ -0.77
UPF2-202ENST00000357604 ZNF746Q6NUN9 644 aaPredicted RBP10.26□□□□□ -0.77
UPF2-202ENST00000357604 TRMT1LQ7Z2T5 733 aaKnown RBP10.26□□□□□ -0.77
UPF2-202ENST00000357604 RPUSD2Q8IZ73 545 aaKnown RBP10.26□□□□□ -0.77
UPF2-202ENST00000357604 DDX19AQ9NUU7 478 aaKnown RBP10.26□□□□□ -0.77
UPF2-202ENST00000357604 CYP39A1Q9NYL5 469 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms