RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ITPKAP23677 461 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 CDC27P30260 824 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 CAMK2GQ13555 558 aaPredicted RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 INPP5AQ14642 412 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 TCEAL1Q15170 157 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 PKN1Q16512 942 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 ZSCAN23Q3MJ62 389 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 PCNX4Q63HM2 1172 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 RCSD1Q6JBY9 416 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 TTC6Q86TZ1 520 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 ERC1Q8IUD2 1116 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 GPRASP2Q96D09 838 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 TMEM74Q96NL1 305 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 FAM126AQ9BYI3 521 aaPredicted RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 UPF3BQ9BZI7 483 aaKnown RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 SIL1Q9H173 461 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 BOLA2Q9H3K6 86 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 LY9Q9HBG7 655 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 PAG1Q9NWQ8 432 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 TMOD3Q9NYL9 352 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 POLR3KQ9Y2Y1 108 aaPredicted RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 BAZ2BQ9UIF8 2168 aaKnown RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 MYO15AQ9UKN7 3530 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 ELOA3CA0A087WX78 387 aaPredicted RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 ELOA3DA6NLF2 546 aaPredicted RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 POLRMTO00411 1230 aaKnown RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 PDE8AO60658 829 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 JAK2O60674 1132 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 FGAP02671 866 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 VEGFAP15692 232 aaPredicted RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 PDIA3P30101 505 aaKnown RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 HSPA1LP34931 641 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 LIG3P49916 1009 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 TOB1P50616 345 aaPredicted RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 ELOA3BQ3SY89 546 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 AXDND1Q5T1B0 1012 aaPredicted RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 CEP135Q66GS9 1140 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 GDF6Q6KF10 455 aaPredicted RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 DTHD1Q6ZMT9 781 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 ELOA3Q8NG57 546 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 UBXN4Q92575 508 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 CELF1Q92879 486 aaKnown RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 SHDQ96IW2 340 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 FAM84BQ96KN1 310 aaPredicted RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 HPSEQ9Y251 543 aa2.76□□□□□ -1.97
VPS54-202ENST00000354504 ZNF638Q14966 1978 aaKnown RBP2.76□□□□□ -1.97
VPS54-202ENST00000354504 SSC5DA1L4H1 1573 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 SZT2Q5T011 3432 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 IGKV6D-41A0A0C4DH26 115 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 ADAM11O75078 769 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 ALBP02768 609 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 GYS1P13807 737 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 EIF2AK2P19525 551 aaKnown RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 KCNA3P22001 575 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 CLCQ05315 142 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 MCMDC2Q4G0Z9 681 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 EARS2Q5JPH6 523 aaKnown RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 TTC39BQ5VTQ0 682 aaPredicted RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 MRM1Q6IN84 353 aaKnown RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 TTBK2Q6IQ55 1244 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 DDX46Q7L014 1031 aaKnown RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 APTXQ7Z2E3 356 aaKnown RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 FAM35AQ86V20 835 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 SGMS1Q86VZ5 419 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 GALNT11Q8NCW6 608 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 SPATA20Q8TB22 786 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 DDX54Q8TDD1 881 aaKnown RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 BUD13Q9BRD0 619 aaKnown RBP eCLIP2.75□□□□□ -1.971e-6■■■□□ 15.8
VPS54-202ENST00000354504 KCNF1Q9H3M0 494 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 CWC22Q9HCG8 908 aaKnown RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 SRP68Q9UHB9 627 aaKnown RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 NARFQ9UHQ1 456 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 MINPP1Q9UNW1 487 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 RALGAPA2Q2PPJ7 1873 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 UNC80Q8N2C7 3258 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 RNF113AO15541 343 aaKnown RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 HOXA10P31260 410 aaPredicted RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 NRG1Q02297 640 aaPredicted RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 RBL2Q08999 1139 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 SERINC3Q13530 473 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 UBE3CQ15386 1083 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 IL17AQ16552 155 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 SV2BQ7L1I2 683 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 CNTROBQ8N137 903 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 C4orf32Q8N8J7 132 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 LENG1Q96BZ8 264 aaPredicted RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 TEX13AQ9BXU3 409 aaPredicted RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 FTOQ9C0B1 505 aaKnown RBP eCLIP2.75□□□□□ -1.97
VPS54-202ENST00000354504 BHLHE41Q9C0J9 482 aaPredicted RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 SMG9Q9H0W8 520 aaKnown RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 ZSWIM4Q9H7M6 989 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 ST7Q9NRC1 585 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 KCNK4Q9NYG8 393 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 FNDC1Q4ZHG4 1894 aaPredicted RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 SHISA8B8ZZ34 492 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 SOX1O00570 391 aaPredicted RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 SH2B2O14492 632 aaPredicted RBP2.75□□□□□ -1.97
VPS54-202ENST00000354504 KLF4O43474 513 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 RPS6KA4O75676 772 aa2.75□□□□□ -1.97
VPS54-202ENST00000354504 REC8O95072 547 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms