RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 TGS1Q96RS0 853 aaKnown RBP13.11□□□□□ -0.31
COL12A1-202ENST00000345356 ARHGAP10A1A4S6 786 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 CD19P15391 556 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 SP4Q02446 784 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 DEUP1Q05D60 604 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 ZNF804AQ7Z570 1209 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 LPIN2Q92539 896 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 TTC1Q99614 292 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 NDE1Q9NXR1 346 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 ADGRL2O95490 1459 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 PLS3P13797 630 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 CCND1P24385 295 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 SLC12A2P55011 1212 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.1□□□□□ -0.31
COL12A1-202ENST00000345356 CCDC138Q96M89 665 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 EFHD1Q9BUP0 239 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 GJB4Q9NTQ9 266 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 FBXL5Q9UKA1 691 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 PHF20L1A8MW92 1017 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 SGK1O00141 431 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 DAPK3O43293 454 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 HAUS5O94927 633 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 NR2F2P24468 414 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 TRAPPC10P48553 1259 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 PLCB4Q15147 1175 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 PPM1KQ8N3J5 372 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 HNRNPLLQ8WVV9 542 aaKnown RBP13.1□□□□□ -0.31
COL12A1-202ENST00000345356 COL4A3BPQ9Y5P4 624 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 MAD1L1Q9Y6D9 718 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 EDC4Q6P2E9 1401 aaKnown RBP13.1□□□□□ -0.31
COL12A1-202ENST00000345356 GCC2Q8IWJ2 1684 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 SEC24CP53992 1094 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 FKBP3Q00688 224 aaKnown RBP13.1□□□□□ -0.31
COL12A1-202ENST00000345356 CYB5D1Q6P9G0 228 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 SRRM1Q8IYB3 904 aaKnown RBP13.1□□□□□ -0.31
COL12A1-202ENST00000345356 CYFIP2Q96F07 1278 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 TRIM56Q9BRZ2 755 aaKnown RBP13.1□□□□□ -0.31
COL12A1-202ENST00000345356 PPARGC1AQ9UBK2 798 aaKnown RBP13.1□□□□□ -0.31
COL12A1-202ENST00000345356 AP2B1P63010 937 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 NSMCE1Q8WV22 266 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 DACT3Q96B18 629 aaPredicted RBP13.1□□□□□ -0.31
COL12A1-202ENST00000345356 GDAQ9Y2T3 454 aa13.1□□□□□ -0.31
COL12A1-202ENST00000345356 NUP153P49790 1475 aaKnown RBP13.09□□□□□ -0.31
COL12A1-202ENST00000345356 SHANK2Q9UPX8 1470 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 KDM5AP29375 1690 aaKnown RBP13.09□□□□□ -0.31
COL12A1-202ENST00000345356 RASA4BC9J798 803 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 ZNF185O15231 689 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 RASA4O43374 803 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 AFPP02771 609 aaKnown RBP13.09□□□□□ -0.31
COL12A1-202ENST00000345356 RGS9BPQ6ZS82 235 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 GJA10Q969M2 543 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 MAST3O60307 1309 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 GFPT2O94808 682 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 PDE6AP16499 860 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 SCYL1Q96KG9 808 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 NLRP3Q96P20 1036 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 NOD2Q9HC29 1040 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 PCDHA12Q9UN75 941 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 RAPGEF6Q8TEU7 1601 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 ZBBXA8MT70 800 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 CFLARO15519 480 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 KCNA3P22001 575 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 JADE1Q6IE81 842 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 PACS2Q86VP3 889 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 LARP4BQ92615 738 aaKnown RBP13.09□□□□□ -0.31
COL12A1-202ENST00000345356 SGSM3Q96HU1 749 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 FAM161BQ96MY7 647 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 RNF26Q9BY78 433 aaPredicted RBP13.09□□□□□ -0.31
COL12A1-202ENST00000345356 M0R2C6 588 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 MYL1P05976 194 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 NCF2P19878 526 aaPredicted RBP13.09□□□□□ -0.31
COL12A1-202ENST00000345356 CASP1P29466 404 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 ALKBH5Q6P6C2 394 aaKnown RBP13.09□□□□□ -0.31
COL12A1-202ENST00000345356 EPM2AIP1Q7L775 607 aaPredicted RBP13.09□□□□□ -0.31
COL12A1-202ENST00000345356 RUBCNQ92622 972 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 DCAF5Q96JK2 942 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 DDX47Q9H0S4 455 aaKnown RBP13.09□□□□□ -0.31
COL12A1-202ENST00000345356 SMYD3Q9H7B4 428 aa13.09□□□□□ -0.31
COL12A1-202ENST00000345356 TOM1L1O75674 476 aa13.08□□□□□ -0.31
COL12A1-202ENST00000345356 KRT3P12035 628 aa13.08□□□□□ -0.31
COL12A1-202ENST00000345356 SLC20A2Q08357 652 aa13.08□□□□□ -0.31
COL12A1-202ENST00000345356 TPH2Q8IWU9 490 aa13.08□□□□□ -0.31
COL12A1-202ENST00000345356 GABPB2Q8TAK5 448 aaPredicted RBP13.08□□□□□ -0.31
COL12A1-202ENST00000345356 SERPINI1Q99574 410 aa13.08□□□□□ -0.31
COL12A1-202ENST00000345356 TRPM2O94759 1503 aa13.08□□□□□ -0.32
COL12A1-202ENST00000345356 TTC26A0AVF1 554 aa13.08□□□□□ -0.32
COL12A1-202ENST00000345356 PODXLO00592 558 aa13.08□□□□□ -0.32
COL12A1-202ENST00000345356 RSBN1LQ6PCB5 846 aaPredicted RBP13.08□□□□□ -0.32
COL12A1-202ENST00000345356 ZNF653Q96CK0 615 aa13.08□□□□□ -0.32
COL12A1-202ENST00000345356 PTCH1Q13635 1447 aa13.08□□□□□ -0.32
COL12A1-202ENST00000345356 GRID2IPA4D2P6 1211 aa13.08□□□□□ -0.32
COL12A1-202ENST00000345356 SH3BP5O60239 455 aa13.08□□□□□ -0.32
COL12A1-202ENST00000345356 KRT10P13645 584 aa13.08□□□□□ -0.32
COL12A1-202ENST00000345356 BRAFP15056 766 aa13.08□□□□□ -0.32
COL12A1-202ENST00000345356 ATICP31939 592 aa13.08□□□□□ -0.32
COL12A1-202ENST00000345356 MRPS35P82673 323 aaKnown RBP13.08□□□□□ -0.32
COL12A1-202ENST00000345356 NRBF2Q96F24 287 aa13.08□□□□□ -0.32
COL12A1-202ENST00000345356 DCTN4Q9UJW0 460 aa13.08□□□□□ -0.32
COL12A1-202ENST00000345356 DDX39AO00148 427 aaKnown RBP13.08□□□□□ -0.32
COL12A1-202ENST00000345356 GPC4O75487 556 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms