RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 PTH1RQ03431 593 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 BFSP1Q12934 665 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ALCAMQ13740 583 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CNGA2Q16280 664 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 GIMAP8Q8ND71 665 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CCDC42Q96M95 316 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF341Q9BYN7 854 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CCPG1Q9ULG6 757 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 DIS3Q9Y2L1 958 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 MYH10P35580 1976 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 SH3TC1Q8TE82 1336 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 LRRD1A4D1F6 860 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CCDC151A5D8V7 595 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 RASGRF2O14827 1237 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PYGMP11217 842 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 TCP10Q12799 353 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ADRM1Q16186 407 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ZC3H18Q86VM9 953 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 C3orf20Q8ND61 904 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 HAUS7Q99871 368 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 FRMD8Q9BZ67 464 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 YY1AP1Q9H869 796 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 TSHZ2Q9NRE2 1034 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF212Q9UDV6 495 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 OPLAHO14841 1288 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 TBCAO75347 108 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ITIH3Q06033 890 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 C16orf72Q14CZ0 275 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CFAP221Q4G0U5 840 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 GLE1Q53GS7 698 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CEP68Q76N32 757 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 DEFB132Q7Z7B7 95 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 METTL23Q86XA0 190 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PLA2G4DQ86XP0 818 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 C12orf50Q8NA57 414 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 MCUR1Q96AQ8 359 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 C19orf60Q96EN9 201 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 NUP88Q99567 741 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PRR12Q9ULL5 1215 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF233A6NK53 670 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ABL1P00519 1130 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ATF7P17544 494 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 KRT4P19013 534 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ERCC5P28715 1186 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 UBE4AQ14139 1066 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 KRT33BQ14525 404 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ANKRD20A4Q4UJ75 823 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ANKRD20A8PQ5CZ79 823 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ANKRD20A2Q5SQ80 823 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ANKRD20A1Q5TYW2 823 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 USP50Q70EL3 339 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 TRMT1LQ7Z2T5 733 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CNNM3Q8NE01 707 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PPP4R1Q8TF05 950 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CCDC113Q9H0I3 377 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 TUFT1Q9NNX1 390 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 IL1RAPL2Q9NP60 686 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 TXLNGQ9NUQ3 528 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PPP1R9AQ9ULJ8 1098 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PRR36Q9H6K5 1346 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ROBO2Q9HCK4 1378 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF213O14771 459 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 OATP04181 439 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 FCER1AP12319 257 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 STRN3Q13033 797 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 MICALL2Q8IY33 904 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ZSCAN1Q8NBB4 408 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 APBB2Q92870 758 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 GRAMD1AQ96CP6 724 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 SPDL1Q96EA4 605 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 OTUB1Q96FW1 271 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 TRIM15Q9C019 465 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 KLHL14Q9P2G3 628 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 UTP11Q9Y3A2 253 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 TCHHQ07283 1943 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 NHSL1Q5SYE7 1610 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 KDM4FA0A1W2PPD8 638 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 ARHGAP42A6NI28 874 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PI4K2BG5E9Z4 385 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PRMT2P55345 433 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CAV1Q03135 178 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 TRADDQ15628 312 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CEP85Q6P2H3 762 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PI4K2BQ8TCG2 481 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PSPC1Q8WXF1 523 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 MTBPQ96DY7 904 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 METTL14Q9HCE5 456 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 TMEM39AQ9NV64 488 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 TUBA8Q9NY65 449 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 FNDC3AQ9Y2H6 1198 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PXDNQ92626 1479 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 SFI1A8K8P3 1242 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 SNUPNO95149 360 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CLTAP09496 248 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 MX1P20591 662 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 RPL22P35268 128 aaKnown RBP3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PCK1P35558 622 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 MAP2K2P36507 400 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 PRR16Q569H4 304 aa3.57□□□□□ -1.84
CSMD3-202ENST00000339701 CCDC157Q569K6 752 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms