RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 HOOK1Q9UJC3 728 aaKnown RBP4.66□□□□□ -1.66
MCF2-201ENST00000338585 AGTPBP1Q9UPW5 1226 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 MYPNQ86TC9 1320 aa4.66□□□□□ -1.66
MCF2-201ENST00000338585 POTEB3A0JP26 581 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 EML1O00423 815 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 MEIS1O00470 390 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 ATP2A1O14983 1001 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 GTPBP6O43824 516 aaPredicted RBP4.65□□□□□ -1.66
MCF2-201ENST00000338585 MED24O75448 989 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 CNMDO75829 334 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 MYCLP12524 364 aaPredicted RBP4.65□□□□□ -1.66
MCF2-201ENST00000338585 HOXA7P31268 230 aaPredicted RBP4.65□□□□□ -1.66
MCF2-201ENST00000338585 CCT6AP40227 531 aaKnown RBP4.65□□□□□ -1.66
MCF2-201ENST00000338585 OAZ1P54368 228 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 HERVK_113P62684 666 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 IRX3P78415 501 aaPredicted RBP4.65□□□□□ -1.66
MCF2-201ENST00000338585 MCM6Q14566 821 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 UVSSAQ2YD98 709 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 KRT79Q5XKE5 535 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 GPAT2Q6NUI2 795 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 POTEBQ6S5H4 581 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 SLFN12Q8IYM2 578 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 CALML4Q96GE6 196 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 MED15Q96RN5 788 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 RMDN3Q96TC7 470 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 RAB34Q9BZG1 259 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 WDR11Q9BZH6 1224 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 GBA2Q9HCG7 927 aaPredicted RBP4.65□□□□□ -1.66
MCF2-201ENST00000338585 TXNRD2Q9NNW7 524 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 A1CFQ9NQ94 594 aaKnown RBP4.65□□□□□ -1.66
MCF2-201ENST00000338585 KBTBD4Q9NVX7 518 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 VAV3Q9UKW4 847 aa4.65□□□□□ -1.66
MCF2-201ENST00000338585 RBBP6Q7Z6E9 1792 aaKnown RBP4.65□□□□□ -1.66
MCF2-201ENST00000338585 A0A0G2JMZ2 1700 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 POTEFA5A3E0 1075 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 E9PMD0 336 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 TBX3O15119 743 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 CHMP2AO43633 222 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 COBLO75128 1261 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 SMC2O95347 1197 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 ADCY5O95622 1261 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 RPN1P04843 607 aaKnown RBP4.65□□□□□ -1.67
MCF2-201ENST00000338585 CYP2C8P10632 490 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 CNTN2Q02246 1040 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 CYP4A11Q02928 519 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 NCAPHQ15003 741 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 PGM5Q15124 567 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 TMEM119Q4V9L6 283 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 CST9Q5W186 159 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 PCNX4Q63HM2 1172 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 TEX2Q8IWB9 1127 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 TRMT44Q8IYL2 757 aaKnown RBP4.65□□□□□ -1.67
MCF2-201ENST00000338585 CDK5RAP3Q96JB5 506 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 FAM20AQ96MK3 541 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 PPP1R9BQ96SB3 815 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 MXRA8Q9BRK3 442 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 PDCD2LQ9BRP1 358 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 PYM1Q9BRP8 204 aaKnown RBP4.65□□□□□ -1.67
MCF2-201ENST00000338585 ACAD9Q9H845 621 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 EHMT1Q9H9B1 1298 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 PXMP2Q9NR77 195 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 CYP39A1Q9NYL5 469 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 ASTN1O14525 1302 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 FRMPD4Q14CM0 1322 aa4.65□□□□□ -1.67
MCF2-201ENST00000338585 MYMKA6NI61 221 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 BECN2A8MW95 431 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 DDX39AO00148 427 aaKnown RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 KLRC4O43908 158 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 PSMD10O75832 226 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 CAVIN2O95810 425 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 ITGBL1O95965 494 aaPredicted RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 SPATA31C1P0DKV0 1188 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 FSTL1Q12841 308 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 SNAPC2Q13487 334 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 Q3C1V9 767 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 TKFCQ3LXA3 575 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 LRCH2Q5VUJ6 765 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 ARHGEF16Q5VV41 709 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 OTOP1Q7RTM1 612 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 CATSPER3Q86XQ3 398 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 LARP4BQ92615 738 aaKnown RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 ANP32BQ92688 251 aaKnown RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 SLC5A5Q92911 643 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 HPS3Q969F9 1004 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 CCDC34Q96HJ3 373 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 MS4A4AQ96JQ5 239 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 PDLIM2Q96JY6 352 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 GSDMAQ96QA5 445 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 PHF12Q96QT6 1004 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 ZNF577Q9BSK1 485 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 MOV10L1Q9BXT6 1211 aaKnown RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 TRIM9Q9C026 710 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 NAT10Q9H0A0 1025 aaKnown RBP4.64□□□□□ -1.67
MCF2-201ENST00000338585 SPATC1LQ9H0A9 340 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 HSD3B7Q9H2F3 369 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 KCNH7Q9NS40 1196 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 RGL1Q9NZL6 768 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 RBPJLQ9UBG7 517 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 PNMA2Q9UL42 364 aa4.64□□□□□ -1.67
MCF2-201ENST00000338585 KIAA1024Q9UPX6 916 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms