RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 NUB1Q9Y5A7 615 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 E9PCH4 1651 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 ABCA6Q8N139 1617 aa11.1□□□□□ -0.63
CHD3-201ENST00000330494 H7C0C1 242 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 N4BP1O75113 896 aaKnown RBP11.09□□□□□ -0.63
CHD3-201ENST00000330494 TUBBP07437 444 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 ATP5OP48047 213 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 ADCY1Q08828 1119 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 PDXDC2PQ6P474 469 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 ACRBPQ8NEB7 543 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 GSDMBQ8TAX9 411 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 GCNT4Q9P109 453 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 GMNNO75496 209 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 INPP5BP32019 993 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 RESTQ13127 1097 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 SLC10A4Q96EP9 437 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 CCDC51Q96ER9 411 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 MYCBPQ99417 103 aaPredicted RBP11.09□□□□□ -0.63
CHD3-201ENST00000330494 ZNF148Q9UQR1 794 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 KIF3CO14782 793 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 PRPF3O43395 683 aaKnown RBP11.09□□□□□ -0.63
CHD3-201ENST00000330494 CIB2O75838 187 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 MOCS3O95396 460 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 AFPP02771 609 aaKnown RBP11.09□□□□□ -0.63
CHD3-201ENST00000330494 SLC12A2P55011 1212 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 TOB2Q14106 344 aaPredicted RBP11.09□□□□□ -0.63
CHD3-201ENST00000330494 ATP6V0A1Q93050 837 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 PAGE5Q96GU1 130 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 MAD1L1Q9Y6D9 718 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 PNMA6FA0A0J9YX94 578 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 CHRNA5P30532 468 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 CEP128Q6ZU80 1094 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 SDCCAG8Q86SQ7 713 aaPredicted RBP11.09□□□□□ -0.63
CHD3-201ENST00000330494 ABI1Q8IZP0 508 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 DCLK2Q8N568 766 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 DHX36Q9H2U1 1008 aaKnown RBP11.09□□□□□ -0.63
CHD3-201ENST00000330494 NRKQ7Z2Y5 1582 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 SGK1O00141 431 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 RGS16O15492 202 aaPredicted RBP11.09□□□□□ -0.63
CHD3-201ENST00000330494 NOL3O60936 208 aaKnown RBP11.09□□□□□ -0.63
CHD3-201ENST00000330494 SETSIPP0DME0 302 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 NSFP46459 744 aaKnown RBP11.09□□□□□ -0.63
CHD3-201ENST00000330494 RFX6Q8HWS3 928 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 SCYL1Q96KG9 808 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 ACCSQ96QU6 501 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 SPTLC3Q9NUV7 552 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 USP17L15C9J2P7 530 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 USP17L13C9JLJ4 530 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 USP17L11C9JVI0 530 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 USP17L18D6R9N7 530 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 USP17L22D6RA61 530 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 USP17L17D6RBQ6 530 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 USP17L19D6RCP7 530 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 USP17L20D6RJB6 530 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 RNASELQ05823 741 aaKnown RBP11.09□□□□□ -0.63
CHD3-201ENST00000330494 GABPB1Q06547 395 aaPredicted RBP11.09□□□□□ -0.63
CHD3-201ENST00000330494 USP17L24Q0WX57 530 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 USP17L6PQ6QN14 398 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 OXER1Q8TDS5 423 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 NT5C1BQ96P26 610 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 FAM49AQ9H0Q0 323 aaPredicted RBP11.09□□□□□ -0.63
CHD3-201ENST00000330494 CD209Q9NNX6 404 aa11.09□□□□□ -0.63
CHD3-201ENST00000330494 PTK2Q05397 1052 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 C2orf54Q08AI8 447 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 SEPT2Q15019 361 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 METTL14Q9HCE5 456 aaKnown RBP11.08□□□□□ -0.64
CHD3-201ENST00000330494 PIM2Q9P1W9 311 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 STK38LQ9Y2H1 464 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 ABCC12Q96J65 1359 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 H2AFZP0C0S5 128 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 PEX3P56589 373 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 TFDP1Q14186 410 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 RUFY4Q6ZNE9 571 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 H2AFVQ71UI9 128 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 PTCH1Q13635 1447 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 ABCB11O95342 1321 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 CCNA1P78396 465 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 SCARF1Q14162 830 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 NXNQ6DKJ4 435 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 FAM149B1Q96BN6 582 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 CEP95Q96GE4 821 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 ZHX2Q9Y6X8 837 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 FTCDO95954 541 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 CHGBP05060 677 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 MFAP3P55082 362 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 GUCY2DQ02846 1103 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 CUL4BQ13620 913 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 RETREG2Q8NC44 543 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 NACC1Q96RE7 527 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 NARFQ9UHQ1 456 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 KCNG1Q9UIX4 513 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 RIPOR2Q9Y4F9 1068 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 POTEMA6NI47 508 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 USP17L10C9JJH3 530 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 I3L4J1 428 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 LAD1O00515 517 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 PDE1CQ14123 709 aaPredicted RBP11.08□□□□□ -0.64
CHD3-201ENST00000330494 RNF207Q6ZRF8 634 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 VSIG1Q86XK7 387 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 RTKN2Q8IZC4 609 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms