RNA–Protein interactions for RNA: ENST00000328159.8

TPM3-205, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,771 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-205ENST00000328159 MCF2L2Q86YR7 1114 aa16.69■□□□□ 0.26
TPM3-205ENST00000328159 ANKRD20A12PQ8NF67 263 aa16.69■□□□□ 0.26
TPM3-205ENST00000328159 P2RX5Q93086 422 aa16.69■□□□□ 0.26
TPM3-205ENST00000328159 CTDP1Q9Y5B0 961 aaPredicted RBP16.69■□□□□ 0.26
TPM3-205ENST00000328159 ZHX2Q9Y6X8 837 aa16.69■□□□□ 0.26
TPM3-205ENST00000328159 BICDL2A1A5D9 508 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 KCNJ18B7U540 433 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 NFIBO00712 420 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 PLA2G4BP0C869 781 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 FDX1P10109 184 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 CCNE1P24864 410 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 HOXA7P31268 230 aaPredicted RBP16.68■□□□□ 0.26
TPM3-205ENST00000328159 KCNJ12Q14500 433 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 TCP11X2Q5H9J9 407 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 NOL9Q5SY16 702 aaKnown RBP16.68■□□□□ 0.26
TPM3-205ENST00000328159 TTI2Q6NXR4 508 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 CATSPER3Q86XQ3 398 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 KIAA0895Q8NCT3 520 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 SLC5A5Q92911 643 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 HPS3Q969F9 1004 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 TRIM47Q96LD4 638 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 C12orf42Q96LP6 360 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 THAP9Q9H5L6 903 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 BMP2KQ9NSY1 1161 aaPredicted RBP16.68■□□□□ 0.26
TPM3-205ENST00000328159 PNMA2Q9UL42 364 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 RABGAP1Q9Y3P9 1069 aa16.68■□□□□ 0.26
TPM3-205ENST00000328159 LRRC10BA6NIK2 292 aa16.67■□□□□ 0.26
TPM3-205ENST00000328159 C19orf81C9J6K1 198 aa16.67■□□□□ 0.26
TPM3-205ENST00000328159 TEX33O43247 280 aa16.67■□□□□ 0.26
TPM3-205ENST00000328159 SSBP05455 408 aaKnown RBP eCLIP16.67■□□□□ 0.26
TPM3-205ENST00000328159 SPATA31C1P0DKV0 1188 aa16.67■□□□□ 0.26
TPM3-205ENST00000328159 IDEP14735 1019 aa16.67■□□□□ 0.26
TPM3-205ENST00000328159 RPA1P27694 616 aa16.67■□□□□ 0.26
TPM3-205ENST00000328159 CEP55Q53EZ4 464 aa16.67■□□□□ 0.26
TPM3-205ENST00000328159 NOC3LQ8WTT2 800 aaKnown RBP16.67■□□□□ 0.26
TPM3-205ENST00000328159 DNAJC19Q96DA6 116 aa16.67■□□□□ 0.26
TPM3-205ENST00000328159 SYT17Q9BSW7 474 aa16.67■□□□□ 0.26
TPM3-205ENST00000328159 SLC39A2Q9NP94 309 aa16.67■□□□□ 0.26
TPM3-205ENST00000328159 ADARB2Q9NS39 739 aaKnown RBP16.67■□□□□ 0.26
TPM3-205ENST00000328159 RPTORQ8N122 1335 aa16.67■□□□□ 0.26
TPM3-205ENST00000328159 RLFQ13129 1914 aa16.67■□□□□ 0.26
TPM3-205ENST00000328159 POTEFA5A3E0 1075 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 NRDCO43847 1150 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 POTEIP0CG38 1075 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 PBX1P40424 430 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 COPB1P53618 953 aaKnown RBP16.66■□□□□ 0.26
TPM3-205ENST00000328159 EHHADHQ08426 723 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 PSMD2Q13200 908 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 MUM1L1Q5H9M0 696 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 DNTTIP2Q5QJE6 756 aaKnown RBP16.66■□□□□ 0.26
TPM3-205ENST00000328159 POTEGQ6S5H5 508 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 POTEEQ6S8J3 1075 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 GPBP1Q86WP2 473 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 IRF2BP1Q8IU81 584 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 DUSP9Q99956 384 aaKnown RBP16.66■□□□□ 0.26
TPM3-205ENST00000328159 COL20A1Q9P218 1284 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 MEIS1O00470 390 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 VWA5AO00534 786 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 PSMD10O75832 226 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 HMGCS2P54868 508 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 SETQ01105 290 aaPredicted RBP16.66■□□□□ 0.26
TPM3-205ENST00000328159 LRCH2Q5VUJ6 765 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 SAMD3Q8N6K7 520 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 ATG4CQ96DT6 458 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 POLR3CQ9BUI4 534 aaPredicted RBP16.66■□□□□ 0.26
TPM3-205ENST00000328159 SRRTQ9BXP5 876 aaKnown RBP16.66■□□□□ 0.26
TPM3-205ENST00000328159 TAB2Q9NYJ8 693 aa16.66■□□□□ 0.26
TPM3-205ENST00000328159 MAP3K20Q9NYL2 800 aaKnown RBP16.66■□□□□ 0.26
TPM3-205ENST00000328159 COL11A1P12107 1806 aaPredicted RBP16.66■□□□□ 0.26
TPM3-205ENST00000328159 EML1O00423 815 aa16.65■□□□□ 0.26
TPM3-205ENST00000328159 N4BP3O15049 544 aa16.65■□□□□ 0.26
TPM3-205ENST00000328159 USP2O75604 605 aaPredicted RBP16.65■□□□□ 0.26
TPM3-205ENST00000328159 YBX3P16989 372 aaKnown RBP eCLIP16.65■□□□□ 0.26
TPM3-205ENST00000328159 EEF1GP26641 437 aaKnown RBP16.65■□□□□ 0.26
TPM3-205ENST00000328159 ANKRD40Q6AI12 368 aa16.65■□□□□ 0.26
TPM3-205ENST00000328159 OTOP1Q7RTM1 612 aa16.65■□□□□ 0.26
TPM3-205ENST00000328159 GUF1Q8N442 669 aaKnown RBP16.65■□□□□ 0.26
TPM3-205ENST00000328159 CSGALNACT2Q8N6G5 542 aa16.65■□□□□ 0.26
TPM3-205ENST00000328159 CCDC112Q8NEF3 446 aa16.65■□□□□ 0.26
TPM3-205ENST00000328159 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.65■□□□□ 0.26
TPM3-205ENST00000328159 SYTL5Q8TDW5 730 aaPredicted RBP16.65■□□□□ 0.26
TPM3-205ENST00000328159 EIF2AK1Q9BQI3 630 aaKnown RBP16.65■□□□□ 0.26
TPM3-205ENST00000328159 MXRA8Q9BRK3 442 aa16.65■□□□□ 0.26
TPM3-205ENST00000328159 HOMER2Q9NSB8 354 aa16.65■□□□□ 0.26
TPM3-205ENST00000328159 PANK4Q9NVE7 773 aa16.65■□□□□ 0.26
TPM3-205ENST00000328159 DNM3Q9UQ16 869 aa16.65■□□□□ 0.26
TPM3-205ENST00000328159 CYP11B2P19099 503 aa16.64■□□□□ 0.25
TPM3-205ENST00000328159 SLC12A3P55017 1021 aa16.64■□□□□ 0.25
TPM3-205ENST00000328159 GOLGA8FQ08AF8 430 aa16.64■□□□□ 0.25
TPM3-205ENST00000328159 GOLGA8DPQ0D2H9 430 aa16.64■□□□□ 0.25
TPM3-205ENST00000328159 COASYQ13057 564 aa16.64■□□□□ 0.25
TPM3-205ENST00000328159 PPP2R5CQ13362 524 aa16.64■□□□□ 0.25
TPM3-205ENST00000328159 PRKG1Q13976 671 aa16.64■□□□□ 0.25
TPM3-205ENST00000328159 CCDC65Q8IXS2 484 aa16.64■□□□□ 0.25
TPM3-205ENST00000328159 ZFP91Q96JP5 570 aaPredicted RBP16.64■□□□□ 0.25
TPM3-205ENST00000328159 VPS16Q9H269 839 aa16.64■□□□□ 0.25
TPM3-205ENST00000328159 TMX1Q9H3N1 280 aa16.64■□□□□ 0.25
TPM3-205ENST00000328159 MAGEC2Q9UBF1 373 aaPredicted RBP16.64■□□□□ 0.25
TPM3-205ENST00000328159 WDR90Q96KV7 1748 aa16.64■□□□□ 0.25
TPM3-205ENST00000328159 GAS7O60861 476 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms