RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 EIF3CQ99613 913 aaKnown RBP17.86■□□□□ 0.45
USHBP1-202ENST00000324554 ZBTB12Q9Y330 459 aaPredicted RBP17.86■□□□□ 0.45
USHBP1-202ENST00000324554 KRT86O43790 486 aa17.85■□□□□ 0.45
USHBP1-202ENST00000324554 CLK2P49760 499 aaKnown RBP17.85■□□□□ 0.45
USHBP1-202ENST00000324554 CDK17Q00537 523 aa17.85■□□□□ 0.45
USHBP1-202ENST00000324554 PPP4R3AQ6IN85 833 aa17.85■□□□□ 0.45
USHBP1-202ENST00000324554 SWAP70Q9UH65 585 aa17.85■□□□□ 0.45
USHBP1-202ENST00000324554 ZNF263O14978 683 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 ZNF185O15231 689 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 PHACTR2O75167 634 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 SHMT1P34896 483 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 RAD51AP2Q09MP3 1159 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 VWA3BQ502W6 1294 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 KRT79Q5XKE5 535 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 TTBK2Q6IQ55 1244 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 KCNK18Q7Z418 384 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 LARGE2Q8N3Y3 721 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 GUF1Q8N442 669 aaKnown RBP17.84■□□□□ 0.45
USHBP1-202ENST00000324554 EHBP1Q8NDI1 1231 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 CCDC102AQ96A19 550 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 TDRD3Q9H7E2 651 aaKnown RBP17.84■□□□□ 0.45
USHBP1-202ENST00000324554 QSER1Q2KHR3 1735 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 IPO7O95373 1038 aaKnown RBP17.84■□□□□ 0.45
USHBP1-202ENST00000324554 PLEKP08567 350 aaPredicted RBP17.84■□□□□ 0.45
USHBP1-202ENST00000324554 SHROOM1Q2M3G4 852 aaPredicted RBP17.84■□□□□ 0.45
USHBP1-202ENST00000324554 TMEM119Q4V9L6 283 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 SIK3Q9Y2K2 1263 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 MYO3BQ8WXR4 1341 aa17.84■□□□□ 0.45
USHBP1-202ENST00000324554 PDE2AO00408 941 aaPredicted RBP17.83■□□□□ 0.45
USHBP1-202ENST00000324554 CAPN2P17655 700 aa17.83■□□□□ 0.45
USHBP1-202ENST00000324554 EHHADHQ08426 723 aa17.83■□□□□ 0.45
USHBP1-202ENST00000324554 ECM1Q16610 540 aa17.83■□□□□ 0.45
USHBP1-202ENST00000324554 DDX12PQ92771 950 aa17.83■□□□□ 0.45
USHBP1-202ENST00000324554 IQCDQ96DY2 449 aa17.83■□□□□ 0.45
USHBP1-202ENST00000324554 PURBQ96QR8 312 aaKnown RBP17.83■□□□□ 0.45
USHBP1-202ENST00000324554 NDST4Q9H3R1 872 aa17.83■□□□□ 0.45
USHBP1-202ENST00000324554 MACROD2A1Z1Q3 448 aa17.83■□□□□ 0.44
USHBP1-202ENST00000324554 DDTLA6NHG4 134 aaPredicted RBP17.83■□□□□ 0.44
USHBP1-202ENST00000324554 IDEP14735 1019 aa17.83■□□□□ 0.44
USHBP1-202ENST00000324554 KRT26Q7Z3Y9 468 aa17.83■□□□□ 0.44
USHBP1-202ENST00000324554 SLC16A10Q8TF71 515 aa17.83■□□□□ 0.44
USHBP1-202ENST00000324554 HAS1Q92839 578 aa17.83■□□□□ 0.44
USHBP1-202ENST00000324554 CUL5Q93034 780 aa17.83■□□□□ 0.44
USHBP1-202ENST00000324554 ZDHHC15Q96MV8 337 aa17.83■□□□□ 0.44
USHBP1-202ENST00000324554 DDX25Q9UHL0 483 aaKnown RBP17.83■□□□□ 0.44
USHBP1-202ENST00000324554 PLAGL2Q9UPG8 496 aa17.83■□□□□ 0.44
USHBP1-202ENST00000324554 ABCB11O95342 1321 aa17.82■□□□□ 0.44
USHBP1-202ENST00000324554 EPHB6O15197 1021 aa17.82■□□□□ 0.44
USHBP1-202ENST00000324554 ZMYND10O75800 440 aa17.82■□□□□ 0.44
USHBP1-202ENST00000324554 HNRNPH3P31942 346 aaKnown RBP17.82■□□□□ 0.44
USHBP1-202ENST00000324554 SLC16A2P36021 539 aa17.82■□□□□ 0.44
USHBP1-202ENST00000324554 LRRC63Q05C16 580 aa17.82■□□□□ 0.44
USHBP1-202ENST00000324554 PRMT6Q96LA8 375 aaPredicted RBP17.82■□□□□ 0.44
USHBP1-202ENST00000324554 MAN2A1Q16706 1144 aa17.82■□□□□ 0.44
USHBP1-202ENST00000324554 GPATCH4Q5T3I0 446 aaKnown RBP17.82■□□□□ 0.44
USHBP1-202ENST00000324554 LRRC55Q6ZSA7 311 aa17.82■□□□□ 0.44
USHBP1-202ENST00000324554 GLIS3Q8NEA6 775 aa17.82■□□□□ 0.44
USHBP1-202ENST00000324554 GOLGA5Q8TBA6 731 aa17.82■□□□□ 0.44
USHBP1-202ENST00000324554 FAM71BQ8TC56 605 aa17.82■□□□□ 0.44
USHBP1-202ENST00000324554 GJA10Q969M2 543 aa17.82■□□□□ 0.44
USHBP1-202ENST00000324554 USP17L10C9JJH3 530 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 MPHOSPH10O00566 681 aaKnown RBP17.81■□□□□ 0.44
USHBP1-202ENST00000324554 ZBTB5O15062 677 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 ACTN2P35609 894 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 VAV2P52735 878 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 ATP2B2Q01814 1243 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 KCTD1Q719H9 257 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 SMCR8Q8TEV9 937 aaPredicted RBP17.81■□□□□ 0.44
USHBP1-202ENST00000324554 CCDC42Q96M95 316 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 LRRC27Q9C0I9 530 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 FAM207AQ9NSI2 230 aaPredicted RBP17.81■□□□□ 0.44
USHBP1-202ENST00000324554 FAM198AQ9UFP1 575 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 COL4A5P29400 1685 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 GREB1LQ9C091 1923 aaPredicted RBP17.81■□□□□ 0.44
USHBP1-202ENST00000324554 FGFR1OPO95684 399 aaKnown RBP17.81■□□□□ 0.44
USHBP1-202ENST00000324554 MRPL12P52815 198 aaKnown RBP17.81■□□□□ 0.44
USHBP1-202ENST00000324554 PSMD2Q13200 908 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 CCDC96Q2M329 555 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 HSP90B2PQ58FF3 399 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 CC2D2BQ6DHV5 1058 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 SUPT20HQ8NEM7 779 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 MTMR8Q96EF0 704 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 MYH7BA7E2Y1 1941 aa17.81■□□□□ 0.44
USHBP1-202ENST00000324554 MYBL2P10244 700 aa17.8■□□□□ 0.44
USHBP1-202ENST00000324554 LRRC41Q15345 812 aa17.8■□□□□ 0.44
USHBP1-202ENST00000324554 GSPT2Q8IYD1 628 aaKnown RBP17.8■□□□□ 0.44
USHBP1-202ENST00000324554 RTKN2Q8IZC4 609 aa17.8■□□□□ 0.44
USHBP1-202ENST00000324554 DNAJC19Q96DA6 116 aa17.8■□□□□ 0.44
USHBP1-202ENST00000324554 GDAP1L1Q96MZ0 367 aa17.8■□□□□ 0.44
USHBP1-202ENST00000324554 ARHGAP20Q9P2F6 1191 aa17.8■□□□□ 0.44
USHBP1-202ENST00000324554 SCAF8Q9UPN6 1271 aaKnown RBP17.8■□□□□ 0.44
USHBP1-202ENST00000324554 ZC3H4Q9UPT8 1303 aaKnown RBP17.8■□□□□ 0.44
USHBP1-202ENST00000324554 CLRN2A0PK11 232 aa17.8■□□□□ 0.44
USHBP1-202ENST00000324554 ANO9A1A5B4 782 aa17.8■□□□□ 0.44
USHBP1-202ENST00000324554 SYF2O95926 243 aaKnown RBP17.8■□□□□ 0.44
USHBP1-202ENST00000324554 HOXA7P31268 230 aaPredicted RBP17.8■□□□□ 0.44
USHBP1-202ENST00000324554 CKAP4Q07065 602 aaKnown RBP17.8■□□□□ 0.44
USHBP1-202ENST00000324554 KIF5AQ12840 1032 aa17.8■□□□□ 0.44
USHBP1-202ENST00000324554 SH3BP5LQ7L8J4 393 aa17.8■□□□□ 0.44
USHBP1-202ENST00000324554 PSTPIP2Q9H939 334 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms