RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 CCDC17Q96LX7 622 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 EFCC1Q9HA90 598 aa16.13■□□□□ 0.17
TCOF1-201ENST00000323668 NSUN4Q96CB9 384 aaKnown RBP16.12■□□□□ 0.17
TCOF1-201ENST00000323668 FAM114A2Q9NRY5 505 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 CEP72Q9P209 647 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 PALMO75781 387 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 LMNB1P20700 586 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 PDCLQ13371 301 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 SUGCTQ9HAC7 445 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 VEZTQ9HBM0 779 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 SNX12Q9UMY4 172 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 RABGAP1Q9Y3P9 1069 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 A0A1B0GUA9 196 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 MAP2K2P36507 400 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 GFPT1Q06210 699 aaPredicted RBP16.12■□□□□ 0.17
TCOF1-201ENST00000323668 UBE2SQ16763 222 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 TCHPQ9BT92 498 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 AMNQ9BXJ7 453 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 PSMD14O00487 310 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 CCDC6Q16204 474 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 BEND6Q5SZJ8 279 aaPredicted RBP16.12■□□□□ 0.17
TCOF1-201ENST00000323668 HOMER3Q9NSC5 361 aa16.12■□□□□ 0.17
TCOF1-201ENST00000323668 FEZ2Q9UHY8 353 aaPredicted RBP16.12■□□□□ 0.17
TCOF1-201ENST00000323668 DDX39AO00148 427 aaKnown RBP16.11■□□□□ 0.17
TCOF1-201ENST00000323668 ALDH3A1P30838 453 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 ZBTB16Q05516 673 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 FAM83BQ5T0W9 1011 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 KCTD1Q719H9 257 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 INTS8Q75QN2 995 aaKnown RBP16.11■□□□□ 0.17
TCOF1-201ENST00000323668 TADA2BQ86TJ2 420 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 TRIM7Q9C029 511 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 SH2D4AQ9H788 454 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 BAIAP2L1Q9UHR4 511 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 PCDHA6Q9UN73 950 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 EXOC7Q9UPT5 735 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 PCDHA8Q9Y5H6 950 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 SCNN1DP51172 638 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 CERKLQ49MI3 558 aaPredicted RBP16.11■□□□□ 0.17
TCOF1-201ENST00000323668 CCDC93Q567U6 631 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 WDR44Q5JSH3 913 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 SRLQ86TD4 932 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 HMGB1P1B2RPK0 211 aaPredicted RBP16.11■□□□□ 0.17
TCOF1-201ENST00000323668 ORC2Q13416 577 aaPredicted RBP16.11■□□□□ 0.17
TCOF1-201ENST00000323668 IQCGQ9H095 443 aaKnown RBP16.11■□□□□ 0.17
TCOF1-201ENST00000323668 DAAM1Q9Y4D1 1078 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 FAM169AQ9Y6X4 670 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 PNMA6FA0A0J9YX94 578 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 GAS8O95995 478 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 BIRC3Q13489 604 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 PPP4R3CPQ6ZMV5 832 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 RSRC2Q7L4I2 434 aaKnown RBP16.11■□□□□ 0.17
TCOF1-201ENST00000323668 FNBP1Q96RU3 617 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 EDEM3Q9BZQ6 932 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 ANAPC4Q9UJX5 808 aa16.11■□□□□ 0.17
TCOF1-201ENST00000323668 ZNF185O15231 689 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 DHX9Q08211 1270 aaKnown RBP16.1■□□□□ 0.17
TCOF1-201ENST00000323668 GIMAP8Q8ND71 665 aaPredicted RBP16.1■□□□□ 0.17
TCOF1-201ENST00000323668 PNKPQ96T60 521 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 SYNCQ9H7C4 482 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 MEGF6O75095 1541 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 CNTNAP5Q8WYK1 1306 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 SARSP49591 514 aaKnown RBP16.1■□□□□ 0.17
TCOF1-201ENST00000323668 STK4Q13043 487 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 NAA25Q14CX7 972 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 CCNI2Q6ZMN8 369 aaPredicted RBP16.1■□□□□ 0.17
TCOF1-201ENST00000323668 FAM186BQ8IYM0 893 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 LARSQ9P2J5 1176 aaKnown RBP16.1■□□□□ 0.17
TCOF1-201ENST00000323668 L1RE1Q9UN81 338 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 NCK2O43639 380 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 ERVK-24P63145 666 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 ICA1Q05084 483 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 C12orf60Q5U649 245 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 CEP128Q6ZU80 1094 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 CEP63Q96MT8 703 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 ATP8A1Q9Y2Q0 1164 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 TBX2Q13207 712 aaPredicted RBP16.1■□□□□ 0.17
TCOF1-201ENST00000323668 MUM1L1Q5H9M0 696 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 CDKAL1Q5VV42 579 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 UHMK1Q8TAS1 419 aaKnown RBP16.1■□□□□ 0.17
TCOF1-201ENST00000323668 RAD54LQ92698 747 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 LRRC1Q9BTT6 524 aa16.1■□□□□ 0.17
TCOF1-201ENST00000323668 PPP1R1BQ9UD71 204 aaPredicted RBP16.1■□□□□ 0.17
TCOF1-201ENST00000323668 CLIC2O15247 247 aa16.09■□□□□ 0.17
TCOF1-201ENST00000323668 PSMC2P35998 433 aaKnown RBP16.09■□□□□ 0.17
TCOF1-201ENST00000323668 CUL1Q13616 776 aa16.09■□□□□ 0.17
TCOF1-201ENST00000323668 NT5DC1Q5TFE4 455 aa16.09■□□□□ 0.17
TCOF1-201ENST00000323668 SRP68Q9UHB9 627 aaKnown RBP16.09■□□□□ 0.17
TCOF1-201ENST00000323668 USP17L5A8MUK1 530 aa16.09■□□□□ 0.17
TCOF1-201ENST00000323668 MEIS1O00470 390 aa16.09■□□□□ 0.17
TCOF1-201ENST00000323668 ZYXQ15942 572 aaKnown RBP16.09■□□□□ 0.17
TCOF1-201ENST00000323668 MSANTD4Q8NCY6 345 aa16.09■□□□□ 0.17
TCOF1-201ENST00000323668 MAGOHBQ96A72 148 aaKnown RBP16.09■□□□□ 0.17
TCOF1-201ENST00000323668 AP1M1Q9BXS5 423 aa16.09■□□□□ 0.17
TCOF1-201ENST00000323668 HOMER2Q9NSB8 354 aa16.09■□□□□ 0.17
TCOF1-201ENST00000323668 FAM217BQ9NTX9 383 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-201ENST00000323668 HGSO14964 777 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-201ENST00000323668 ZBTB22O15209 634 aa16.09■□□□□ 0.17
TCOF1-201ENST00000323668 ODR4Q5SWX8 454 aa16.09■□□□□ 0.17
TCOF1-201ENST00000323668 PRM3Q9NNZ6 103 aa16.09■□□□□ 0.17
TCOF1-201ENST00000323668 GCNT4Q9P109 453 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms