RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 RTEL1Q9NZ71 1219 aa18.76■□□□□ 0.59
LSM1-201ENST00000311351 ADD1P35611 737 aaKnown RBP18.75■□□□□ 0.59
LSM1-201ENST00000311351 RCAN1P53805 252 aa18.75■□□□□ 0.59
LSM1-201ENST00000311351 NAPAP54920 295 aa18.75■□□□□ 0.59
LSM1-201ENST00000311351 CCL23P55773 120 aa18.75■□□□□ 0.59
LSM1-201ENST00000311351 PPIGQ13427 754 aaKnown RBP eCLIP18.75■□□□□ 0.59
LSM1-201ENST00000311351 LAMC2Q13753 1193 aa18.75■□□□□ 0.59
LSM1-201ENST00000311351 DGKDQ16760 1214 aa18.75■□□□□ 0.59
LSM1-201ENST00000311351 HSDL1Q3SXM5 330 aa18.75■□□□□ 0.59
LSM1-201ENST00000311351 MYSM1Q5VVJ2 828 aa18.75■□□□□ 0.59
LSM1-201ENST00000311351 NFRKBQ6P4R8 1299 aa18.75■□□□□ 0.59
LSM1-201ENST00000311351 KCNV1Q6PIU1 500 aa18.75■□□□□ 0.59
LSM1-201ENST00000311351 TMEM199Q8N511 208 aa18.75■□□□□ 0.59
LSM1-201ENST00000311351 SPATA33Q96N06 139 aa18.75■□□□□ 0.59
LSM1-201ENST00000311351 USP26Q9BXU7 913 aa18.75■□□□□ 0.59
LSM1-201ENST00000311351 BCAS3Q9H6U6 928 aa18.75■□□□□ 0.59
LSM1-201ENST00000311351 V9GY48 417 aaPredicted RBP18.75■□□□□ 0.59
LSM1-201ENST00000311351 NID2Q14112 1375 aa18.74■□□□□ 0.59
LSM1-201ENST00000311351 ACRP10323 421 aa18.74■□□□□ 0.59
LSM1-201ENST00000311351 PSMA5P28066 241 aa18.74■□□□□ 0.59
LSM1-201ENST00000311351 GNPTABQ3T906 1256 aa18.74■□□□□ 0.59
LSM1-201ENST00000311351 PCNX4Q63HM2 1172 aa18.74■□□□□ 0.59
LSM1-201ENST00000311351 C16orf59Q7L2K0 433 aa18.74■□□□□ 0.59
LSM1-201ENST00000311351 AGXT2Q9BYV1 514 aa18.74■□□□□ 0.59
LSM1-201ENST00000311351 STXBP3O00186 592 aa18.73■□□□□ 0.59
LSM1-201ENST00000311351 EPB41L2O43491 1005 aaKnown RBP18.73■□□□□ 0.59
LSM1-201ENST00000311351 STAM2O75886 525 aa18.73■□□□□ 0.59
LSM1-201ENST00000311351 F2P00734 622 aa18.73■□□□□ 0.59
LSM1-201ENST00000311351 HOXD8P13378 290 aaPredicted RBP18.73■□□□□ 0.59
LSM1-201ENST00000311351 ICAM3P32942 547 aa18.73■□□□□ 0.59
LSM1-201ENST00000311351 PPP1R18Q6NYC8 613 aa18.73■□□□□ 0.59
LSM1-201ENST00000311351 DEFB123Q8N688 67 aa18.73■□□□□ 0.59
LSM1-201ENST00000311351 SCLYQ96I15 445 aa18.73■□□□□ 0.59
LSM1-201ENST00000311351 PGBD1Q96JS3 809 aa18.73■□□□□ 0.59
LSM1-201ENST00000311351 TRIP12Q14669 1992 aaPredicted RBP18.73■□□□□ 0.59
LSM1-201ENST00000311351 SPDYE3A6NKU9 549 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 SPATA31C2B4DYI2 1134 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 FIBPO43427 364 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 PPFIA3O75145 1194 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 SUPT20HL2P0C7V6 817 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 TGFB3P10600 412 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 PSEN2P49810 448 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 PTPN11Q06124 597 aaPredicted RBP18.72■□□□□ 0.59
LSM1-201ENST00000311351 TMEM240Q5SV17 173 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 GDF6Q6KF10 455 aaPredicted RBP18.72■□□□□ 0.59
LSM1-201ENST00000311351 GPR153Q6NV75 609 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 RUFY3Q7L099 469 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 ALG1Q9BT22 464 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 UPF3BQ9BZI7 483 aaKnown RBP18.72■□□□□ 0.59
LSM1-201ENST00000311351 MLXIPQ9HAP2 919 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 PCDHA6Q9UN73 950 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 TELO2Q9Y4R8 837 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 PCDHA8Q9Y5H6 950 aa18.72■□□□□ 0.59
LSM1-201ENST00000311351 ADCY7P51828 1080 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 TOB2Q14106 344 aaPredicted RBP18.71■□□□□ 0.59
LSM1-201ENST00000311351 MFSD10Q14728 455 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 KIAA0753Q2KHM9 967 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 XRRA1Q6P2D8 792 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 ZNF365Q70YC5 407 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 CYFIP1Q7L576 1253 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 FBXL16Q8N461 479 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 CTAGE1Q96RT6 745 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 NCOA5Q9HCD5 579 aaKnown RBP18.71■□□□□ 0.59
LSM1-201ENST00000311351 ZSWIM6Q9HCJ5 1215 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 IL23AQ9NPF7 189 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 RIC8AQ9NPQ8 531 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 BARHL2Q9NY43 387 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 NOD1Q9Y239 953 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 GBF1Q92538 1859 aa18.71■□□□□ 0.59
LSM1-201ENST00000311351 CCDC196A0A1B0GTZ2 297 aa18.7■□□□□ 0.58
LSM1-201ENST00000311351 hCG_1984214I3L0E3 225 aa18.7■□□□□ 0.58
LSM1-201ENST00000311351 HAS3O00219 553 aa18.7■□□□□ 0.58
LSM1-201ENST00000311351 ITGB5P18084 799 aa18.7■□□□□ 0.58
LSM1-201ENST00000311351 SP4Q02446 784 aa18.7■□□□□ 0.58
LSM1-201ENST00000311351 PTGISQ16647 500 aa18.7■□□□□ 0.58
LSM1-201ENST00000311351 PFKFB3Q16875 520 aaPredicted RBP18.7■□□□□ 0.58
LSM1-201ENST00000311351 FAM109BQ6ICB4 259 aaPredicted RBP18.7■□□□□ 0.58
LSM1-201ENST00000311351 PSRC1Q6PGN9 363 aaPredicted RBP18.7■□□□□ 0.58
LSM1-201ENST00000311351 SESTD1Q86VW0 696 aa18.7■□□□□ 0.58
LSM1-201ENST00000311351 ZNF713Q8N859 430 aaPredicted RBP18.7■□□□□ 0.58
LSM1-201ENST00000311351 PHKBQ93100 1093 aa18.7■□□□□ 0.58
LSM1-201ENST00000311351 KATNAL1Q9BW62 490 aa18.7■□□□□ 0.58
LSM1-201ENST00000311351 HDAC6Q9UBN7 1215 aa18.7■□□□□ 0.58
LSM1-201ENST00000311351 SCG2P13521 617 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 CCT2P78371 535 aaKnown RBP18.69■□□□□ 0.58
LSM1-201ENST00000311351 SMAD3P84022 425 aaKnown RBP18.69■□□□□ 0.58
LSM1-201ENST00000311351 NEDD9Q14511 834 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 METTL7BQ6UX53 244 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 NLRX1Q86UT6 975 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 C7orf31Q8N865 590 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 TET1Q8NFU7 2136 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 GPRASP2Q96D09 838 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 VWCEQ96DN2 955 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 FAM161BQ96MY7 647 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 LARP6Q9BRS8 491 aaKnown RBP18.69■□□□□ 0.58
LSM1-201ENST00000311351 C16orf70Q9BSU1 422 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 ANO3Q9BYT9 981 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 TMEM260Q9NX78 707 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 PKD2L1Q9P0L9 805 aa18.69■□□□□ 0.58
LSM1-201ENST00000311351 GTF2IRD1Q9UHL9 959 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms