RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 TMTC3Q6ZXV5 915 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 PNMA8AQ86V59 439 aaPredicted RBP12.04□□□□□ -0.48
LSM3-201ENST00000306024 IFT81Q8WYA0 676 aa12.04□□□□□ -0.48
LSM3-201ENST00000306024 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.04□□□□□ -0.48
LSM3-201ENST00000306024 MYH13Q9UKX3 1938 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 MACROD2A1Z1Q3 448 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 USP14P54578 494 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 HLTFQ14527 1009 aaKnown RBP eCLIP12.03□□□□□ -0.48
LSM3-201ENST00000306024 SEC23AQ15436 765 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 POLR3EQ9NVU0 708 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 TMCO5BA8MYB1 307 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 SKAP2O75563 359 aaPredicted RBP12.03□□□□□ -0.48
LSM3-201ENST00000306024 ASPRV1Q53RT3 343 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 GPATCH4Q5T3I0 446 aaKnown RBP12.03□□□□□ -0.48
LSM3-201ENST00000306024 RAD9BQ6WBX8 426 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 SPDL1Q96EA4 605 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 GPRC5DQ9NZD1 345 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 IQCA1LA6NCM1 817 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 FANCGO15287 622 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 POLR2DO15514 142 aaKnown RBP12.03□□□□□ -0.48
LSM3-201ENST00000306024 SRGAP2O75044 1071 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 SHMT1P34896 483 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 MRPS25P82663 173 aaKnown RBP12.03□□□□□ -0.48
LSM3-201ENST00000306024 SF3A3Q12874 501 aaKnown RBP eCLIP12.03□□□□□ -0.48
LSM3-201ENST00000306024 POSTNQ15063 836 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 SPA17Q15506 151 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 CPLX4Q7Z7G2 160 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 CCDC84Q86UT8 332 aaPredicted RBP12.03□□□□□ -0.48
LSM3-201ENST00000306024 STAG2Q8N3U4 1231 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 JAKMIP2Q96AA8 810 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 PANX2Q96RD6 677 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 PSMB7Q99436 277 aa12.03□□□□□ -0.48
LSM3-201ENST00000306024 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.03□□□□□ -0.48
LSM3-201ENST00000306024 BTBD18B2RXH4 712 aa12.02□□□□□ -0.48
LSM3-201ENST00000306024 GNA11P29992 359 aa12.02□□□□□ -0.48
LSM3-201ENST00000306024 PRPF38AQ8NAV1 312 aaKnown RBP12.02□□□□□ -0.48
LSM3-201ENST00000306024 CUL5Q93034 780 aa12.02□□□□□ -0.48
LSM3-201ENST00000306024 ZKSCAN4Q969J2 545 aaPredicted RBP12.02□□□□□ -0.48
LSM3-201ENST00000306024 RPGRIP1Q96KN7 1286 aa12.02□□□□□ -0.48
LSM3-201ENST00000306024 ZNF341Q9BYN7 854 aa12.02□□□□□ -0.48
LSM3-201ENST00000306024 CEP131Q9UPN4 1083 aa12.02□□□□□ -0.48
LSM3-201ENST00000306024 RCAN1P53805 252 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 TROAPQ12815 778 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 FAM83AQ86UY5 434 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 ARFGAP2Q8N6H7 521 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 MAGEC2Q9UBF1 373 aaPredicted RBP12.02□□□□□ -0.49
LSM3-201ENST00000306024 TACC3Q9Y6A5 838 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 LTBP3Q9NS15 1303 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 CACNA1SQ13698 1873 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 CHD4Q14839 1912 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 CTDNEP1O95476 244 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 CRYMQ14894 314 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 USH1GQ495M9 461 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 KCNV1Q6PIU1 500 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 CPXCR1Q8N123 301 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 IL17RBQ9NRM6 502 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 ADARB2Q9NS39 739 aaKnown RBP12.02□□□□□ -0.49
LSM3-201ENST00000306024 TMOD4Q9NZQ9 345 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 HDAC6Q9UBN7 1215 aa12.02□□□□□ -0.49
LSM3-201ENST00000306024 F5H6K3 240 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 FZD9O00144 591 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 BMP3P12645 472 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 ZNF76P36508 570 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 KLRC3Q07444 240 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 WDR78Q5VTH9 848 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 PIGSQ96S52 555 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 AS3MTQ9HBK9 375 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 IRAK4Q9NWZ3 460 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 FAM184BQ9ULE4 1060 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 TRIM75PA6NK02 468 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 SYF2O95926 243 aaKnown RBP12.01□□□□□ -0.49
LSM3-201ENST00000306024 PPP1R7Q15435 360 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 NBPF12Q5TAG4 269 aaPredicted RBP12.01□□□□□ -0.49
LSM3-201ENST00000306024 KRI1Q8N9T8 703 aaKnown RBP12.01□□□□□ -0.49
LSM3-201ENST00000306024 TRPM4Q8TD43 1214 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 CHURC1Q8WUH1 139 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 GMLQ99445 158 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 MYO1AQ9UBC5 1043 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 MYH2Q9UKX2 1941 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 TEX33O43247 280 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 PRPF3O43395 683 aaKnown RBP12.01□□□□□ -0.49
LSM3-201ENST00000306024 CYLC1P35663 651 aaPredicted RBP12.01□□□□□ -0.49
LSM3-201ENST00000306024 KRT83P78385 493 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 C2orf54Q08AI8 447 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 NNTQ13423 1086 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 GRM4Q14833 912 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 KANK3Q6NY19 840 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 PIK3AP1Q6ZUJ8 805 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 PARP9Q8IXQ6 854 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 SRBD1Q8N5C6 995 aaKnown RBP12.01□□□□□ -0.49
LSM3-201ENST00000306024 NKX2-3Q8TAU0 364 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 SAAL1Q96ER3 474 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 ZBTB21Q9ULJ3 1066 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 ANKRD31Q8N7Z5 1873 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 SYNRGQ9UMZ2 1314 aa12.01□□□□□ -0.49
LSM3-201ENST00000306024 ENO4A6NNW6 628 aa12□□□□□ -0.49
LSM3-201ENST00000306024 USO1O60763 962 aaKnown RBP12□□□□□ -0.49
LSM3-201ENST00000306024 KIF5AQ12840 1032 aa12□□□□□ -0.49
LSM3-201ENST00000306024 TRAF1Q13077 416 aa12□□□□□ -0.49
LSM3-201ENST00000306024 SLC39A14Q15043 492 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms