RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 RMND1Q9NWS8 449 aa10.09□□□□□ -0.79
PDGFC-201ENST00000274071 TRIM33Q9UPN9 1127 aa10.09□□□□□ -0.79
PDGFC-201ENST00000274071 SLC4A7Q9Y6M7 1214 aa10.09□□□□□ -0.79
PDGFC-201ENST00000274071 JCADQ9P266 1359 aa10.09□□□□□ -0.79
PDGFC-201ENST00000274071 MED23Q9ULK4 1368 aa10.09□□□□□ -0.79
PDGFC-201ENST00000274071 TRIM43BA6NCK2 446 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 HEXIM1O94992 359 aaKnown RBP10.08□□□□□ -0.8
PDGFC-201ENST00000274071 CYP21A2P08686 494 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 VARSP26640 1264 aaKnown RBP10.08□□□□□ -0.8
PDGFC-201ENST00000274071 HSD17B3P37058 310 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 CACNA2D1P54289 1103 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 BNIP1Q12981 228 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 RC3H1Q5TC82 1133 aaKnown RBP10.08□□□□□ -0.8
PDGFC-201ENST00000274071 CLASRPQ8N2M8 674 aaKnown RBP10.08□□□□□ -0.8
PDGFC-201ENST00000274071 WDR60Q8WVS4 1066 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 HAPLN3Q96S86 360 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 TIPINQ9BVW5 301 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 FAM129AQ9BZQ8 928 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 CCDC87Q9NVE4 849 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 C1orf167Q5SNV9 1468 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 KRT38O76015 456 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 PRLRP16471 622 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 HDAC4P56524 1084 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 KRT83P78385 493 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 FLIIQ13045 1269 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 DDB1Q16531 1140 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 PTF1AQ7RTS3 328 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 IQCF2Q8IXL9 164 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 CASKIN2Q8WXE0 1202 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 AGBL1Q96MI9 1066 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 GBP5Q96PP8 586 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 PURBQ96QR8 312 aaKnown RBP10.08□□□□□ -0.8
PDGFC-201ENST00000274071 SPATA16Q9BXB7 569 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 CETN3O15182 167 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 PPP6R2O75170 966 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 ATF3P18847 181 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 PDIA3P30101 505 aaKnown RBP10.08□□□□□ -0.8
PDGFC-201ENST00000274071 PTDSS1P48651 473 aaKnown RBP10.08□□□□□ -0.8
PDGFC-201ENST00000274071 TAF7Q15545 349 aaPredicted RBP10.08□□□□□ -0.8
PDGFC-201ENST00000274071 UAP1Q16222 522 aaPredicted RBP10.08□□□□□ -0.8
PDGFC-201ENST00000274071 ZC2HC1CQ53FD0 456 aaPredicted RBP10.08□□□□□ -0.8
PDGFC-201ENST00000274071 KLHL10Q6JEL2 608 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 NFRKBQ6P4R8 1299 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 NANOGNBQ7Z5D8 188 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 LRRC34Q8IZ02 419 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 OGFOD1Q8N543 542 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 RNF10Q8N5U6 811 aaKnown RBP10.08□□□□□ -0.8
PDGFC-201ENST00000274071 STK32AQ8WU08 396 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 LRRC59Q96AG4 307 aaKnown RBP10.08□□□□□ -0.8
PDGFC-201ENST00000274071 CENPTQ96BT3 561 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 ZNF653Q96CK0 615 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 PBKQ96KB5 322 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 SEC31BQ9NQW1 1179 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 SAMD15Q9P1V8 674 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 EFR3BQ9Y2G0 817 aa10.08□□□□□ -0.8
PDGFC-201ENST00000274071 LSM1O15116 133 aaKnown RBP10.07□□□□□ -0.8
PDGFC-201ENST00000274071 CYP1A1P04798 512 aaPredicted RBP10.07□□□□□ -0.8
PDGFC-201ENST00000274071 CTNNA1P35221 906 aaKnown RBP10.07□□□□□ -0.8
PDGFC-201ENST00000274071 PTPAQ15257 358 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 SMUG1Q53HV7 270 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 SH2D4BQ5SQS7 431 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 WDR59Q6PJI9 974 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.07□□□□□ -0.8
PDGFC-201ENST00000274071 GRAMD1CQ8IYS0 662 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 STAG2Q8N3U4 1231 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 ASAP3Q8TDY4 903 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 ATP8B4Q8TF62 1192 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 MTFR1LQ9H019 292 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 USH1CQ9Y6N9 552 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 MYH7P12883 1935 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 A0A0J9YVX5 310 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 PEX11AO75192 247 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 BCRP11274 1271 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 IDO1P14902 403 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 MLH1P40692 756 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 AGBL2Q5U5Z8 902 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 STOX1Q6ZVD7 989 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 GET4Q7L5D6 327 aaPredicted RBP10.07□□□□□ -0.8
PDGFC-201ENST00000274071 DHX32Q7L7V1 743 aaKnown RBP10.07□□□□□ -0.8
PDGFC-201ENST00000274071 ZNF554Q86TJ5 538 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 ARHGAP18Q8N392 663 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 RBBP8NLQ8NC74 664 aaPredicted RBP10.07□□□□□ -0.8
PDGFC-201ENST00000274071 WDR66Q8TBY9 1149 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 RNF25Q96BH1 459 aaPredicted RBP10.07□□□□□ -0.8
PDGFC-201ENST00000274071 CTNNAL1Q9UBT7 734 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 INTUQ9ULD6 942 aa10.07□□□□□ -0.8
PDGFC-201ENST00000274071 TTC26A0AVF1 554 aa10.06□□□□□ -0.8
PDGFC-201ENST00000274071 EIF3FO00303 357 aaPredicted RBP10.06□□□□□ -0.8
PDGFC-201ENST00000274071 ASLP04424 464 aa10.06□□□□□ -0.8
PDGFC-201ENST00000274071 HARSP12081 509 aaKnown RBP10.06□□□□□ -0.8
PDGFC-201ENST00000274071 CD44P16070 742 aaKnown RBP10.06□□□□□ -0.8
PDGFC-201ENST00000274071 PAFAH1B1P43034 410 aa10.06□□□□□ -0.8
PDGFC-201ENST00000274071 KIF23Q02241 960 aaPredicted RBP10.06□□□□□ -0.8
PDGFC-201ENST00000274071 RNASELQ05823 741 aaKnown RBP10.06□□□□□ -0.8
PDGFC-201ENST00000274071 SULT2A1Q06520 285 aa10.06□□□□□ -0.8
PDGFC-201ENST00000274071 DHX9Q08211 1270 aaKnown RBP10.06□□□□□ -0.8
PDGFC-201ENST00000274071 RAB11FIP4Q86YS3 637 aa10.06□□□□□ -0.8
PDGFC-201ENST00000274071 ZCRB1Q8TBF4 217 aaKnown RBP10.06□□□□□ -0.8
PDGFC-201ENST00000274071 SNRNP27Q8WVK2 155 aaKnown RBP10.06□□□□□ -0.8
PDGFC-201ENST00000274071 CTNNBL1Q8WYA6 563 aaPredicted RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms