RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 EPHA10Q5JZY3 1008 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 IRAK1BP1Q5VVH5 260 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 GALNT17Q6IS24 598 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 ARMCX2Q7L311 632 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 PI4K2BQ8TCG2 481 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 FAM227BQ96M60 508 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 YME1L1Q96TA2 773 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 GCOM2Q9BZD3 368 aaPredicted RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 ZNF142P52746 1687 aaPredicted RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 ZNF500O60304 480 aaPredicted RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 NTSR2O95665 410 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 CYLC1P35663 651 aaPredicted RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 ZKSCAN8Q15776 578 aaPredicted RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 PKN2Q16513 984 aaKnown RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 DHX32Q7L7V1 743 aaKnown RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 WHAMMQ8TF30 809 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 LMBR1Q8WVP7 490 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 FAM49AQ9H0Q0 323 aaPredicted RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 RBSNQ9H1K0 784 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 PCDHB7Q9Y5E2 793 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 PCDHB12Q9Y5F1 795 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 ADGRB2O60241 1585 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 LRRD1A4D1F6 860 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 HMGB1P1B2RPK0 211 aaPredicted RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 INO80B-WBP1J3KQ70 363 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 UBE3CQ15386 1083 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 TWF2Q6IBS0 349 aaKnown RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 SNRNP48Q6IEG0 339 aaKnown RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 RNF10Q8N5U6 811 aaKnown RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 CCDC110Q8TBZ0 833 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 DCAF4Q8WV16 495 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 DNAJC25Q9H1X3 360 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 ENTPD7Q9NQZ7 604 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 PCDHB13Q9Y5F0 798 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 TOMM70O94826 608 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 HSPD1P10809 573 aaKnown RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 GJB2P29033 226 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 PHKA2P46019 1235 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 ARL4DP49703 201 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 PPARAQ07869 468 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 NSUN6Q8TEA1 469 aaKnown RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 RNF139Q8WU17 664 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 PIK3R5Q8WYR1 880 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 SNX21Q969T3 373 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 SEC62Q99442 399 aaKnown RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 NUCKS1Q9H1E3 243 aaKnown RBP8.55□□□□□ -1.04
USP3-201ENST00000268049 MYOZ2Q9NPC6 264 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.55□□□□□ -1.04
USP3-201ENST00000268049 FAN1Q9Y2M0 1017 aa8.55□□□□□ -1.04
USP3-201ENST00000268049 KIF1CO43896 1103 aaKnown RBP8.54□□□□□ -1.04
USP3-201ENST00000268049 ZMYND10O75800 440 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 CES5AQ6NT32 575 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 TBC1D16Q8TBP0 767 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 SDR42E1Q8WUS8 393 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 TSC1Q92574 1164 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 ZSCAN16Q9H4T2 348 aaPredicted RBP8.54□□□□□ -1.04
USP3-201ENST00000268049 FMN2Q9NZ56 1722 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 CCNT1O60563 726 aaKnown RBP8.54□□□□□ -1.04
USP3-201ENST00000268049 ZSCAN22P10073 491 aaPredicted RBP8.54□□□□□ -1.04
USP3-201ENST00000268049 ALDH3A1P30838 453 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 CTDSPL2Q05D32 466 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 TYRO3Q06418 890 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 SPP2Q13103 211 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 E2F4Q16254 413 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 ISM2Q6H9L7 571 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 SPATS2Q86XZ4 545 aaKnown RBP8.54□□□□□ -1.04
USP3-201ENST00000268049 RABEP2Q9H5N1 569 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 LSM7Q9UK45 103 aaKnown RBP8.54□□□□□ -1.04
USP3-201ENST00000268049 INPP5FQ9Y2H2 1132 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 MROH7Q68CQ1 1323 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 GIPC1O14908 333 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 ATP2A2P16615 1042 aaKnown RBP8.54□□□□□ -1.04
USP3-201ENST00000268049 STAT3P40763 770 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 ST8SIA6P61647 398 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 HERC4Q5GLZ8 1057 aaPredicted RBP8.54□□□□□ -1.04
USP3-201ENST00000268049 TEX2Q8IWB9 1127 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 MYCT1Q8N699 235 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 EFHBQ8N7U6 833 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.54□□□□□ -1.042e-7■■■■□ 19.6
USP3-201ENST00000268049 CSRNP2Q9H175 543 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 FAM204AQ9H8W3 233 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 IFT122Q9HBG6 1241 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 TNNI1P19237 187 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 SP3Q02447 781 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 EEPD1Q7L9B9 569 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 PHLDB2Q86SQ0 1253 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 EFCAB13Q8IY85 973 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 AOPEPQ8N6M6 819 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 MORC4Q8TE76 937 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 TACO1Q9BSH4 297 aaKnown RBP8.54□□□□□ -1.04
USP3-201ENST00000268049 PLA2G12BQ9BX93 195 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 RASAL2Q9UJF2 1139 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.54□□□□□ -1.04
USP3-201ENST00000268049 MRFAP1Q9Y605 127 aa8.54□□□□□ -1.04
USP3-201ENST00000268049 GH1P01241 217 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 KARSQ15046 597 aaKnown RBP8.53□□□□□ -1.04
USP3-201ENST00000268049 SNCBQ16143 134 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 CALCRLQ16602 461 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 KYAT1Q16773 422 aa8.53□□□□□ -1.04
USP3-201ENST00000268049 SRGAP1Q7Z6B7 1085 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms