RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 WDR64B1ANS9 1081 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 JAK3P52333 1124 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 GOLGA5Q8TBA6 731 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 P2RX5Q93086 422 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 TRPC6Q9Y210 931 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 TACC3Q9Y6A5 838 aa12.84□□□□□ -0.35
VPS4A-201ENST00000254950 POTEB3A0JP26 581 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 POTECB2RU33 542 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 H0YCG3 227 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 PSAPP07602 524 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 UTP14CQ5TAP6 766 aaKnown RBP12.83□□□□□ -0.36
VPS4A-201ENST00000254950 POTEBQ6S5H4 581 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 TEX2Q8IWB9 1127 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 TRPM4Q8TD43 1214 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 K7ENM7 598 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 CASP1P29466 404 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 PDE4CQ08493 712 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 SNW1Q13573 536 aaKnown RBP12.83□□□□□ -0.36
VPS4A-201ENST00000254950 SPECC1LQ69YQ0 1117 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 UNC13DQ70J99 1090 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 DEPTORQ8TB45 409 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 NUP58Q9BVL2 599 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 IMPG2Q9BZV3 1241 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 SHANK3Q9BYB0 1731 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 POLGP54098 1239 aaPredicted RBP12.83□□□□□ -0.36
VPS4A-201ENST00000254950 CACNB1Q02641 598 aaPredicted RBP12.83□□□□□ -0.36
VPS4A-201ENST00000254950 KIF22Q14807 665 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 ENGASEQ8NFI3 743 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 RAD54LQ92698 747 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 CEP170P1Q96L14 293 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 SEPT9Q9UHD8 586 aaPredicted RBP12.83□□□□□ -0.36
VPS4A-201ENST00000254950 ZNF541Q9H0D2 1346 aa12.83□□□□□ -0.36
VPS4A-201ENST00000254950 ADM5C9JUS6 153 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 CCNE1P24864 410 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 ZNF280AP59817 542 aaPredicted RBP12.82□□□□□ -0.36
VPS4A-201ENST00000254950 NOLC1Q14978 699 aaKnown RBP eCLIP12.82□□□□□ -0.36
VPS4A-201ENST00000254950 DDX12PQ92771 950 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 DNAI2Q9GZS0 605 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 LTBP3Q9NS15 1303 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 PVALEFA0A1B0GWK0 134 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 HARSP12081 509 aaKnown RBP12.82□□□□□ -0.36
VPS4A-201ENST00000254950 METTL16Q86W50 562 aaKnown RBP12.82□□□□□ -0.36
VPS4A-201ENST00000254950 CDAN1Q8IWY9 1227 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 CCDC42Q96M95 316 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 FNBP1Q96RU3 617 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 BAG1Q99933 345 aaPredicted RBP12.82□□□□□ -0.36
VPS4A-201ENST00000254950 RWDD2AQ9UIY3 292 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 E9PMD0 336 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 PRR29P0C7W0 189 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 FCER1AP12319 257 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 GRIN1Q05586 938 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 FUT2Q10981 343 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 PDXDC2PQ6P474 469 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 SLC7A3Q8WY07 619 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 DRC1Q96MC2 740 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 SPC25Q9HBM1 224 aa12.82□□□□□ -0.36
VPS4A-201ENST00000254950 ARMCX3Q9UH62 379 aaPredicted RBP12.82□□□□□ -0.36
VPS4A-201ENST00000254950 FOXN1O15353 648 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 ERCC3P19447 782 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 SFNP31947 248 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 SEMA3FQ13275 785 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 DMP1Q13316 513 aaPredicted RBP12.81□□□□□ -0.36
VPS4A-201ENST00000254950 LRRC41Q15345 812 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 SH3BP5LQ7L8J4 393 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 PARVGQ9HBI0 331 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 N4BP2Q86UW6 1770 aaPredicted RBP12.81□□□□□ -0.36
VPS4A-201ENST00000254950 CCDC175P0C221 793 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 EPHA7Q15375 998 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 PIGOQ8TEQ8 1089 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 DYDC2Q96IM9 177 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 GDAQ9Y2T3 454 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 DUOX1Q9NRD9 1551 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 SHTN1A0MZ66 631 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 POTEFA5A3E0 1075 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 P4HBP07237 508 aaKnown RBP12.81□□□□□ -0.36
VPS4A-201ENST00000254950 NR3C2P08235 984 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 POTEIP0CG38 1075 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 KRT9P35527 623 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 RPS6P62753 249 aaKnown RBP12.81□□□□□ -0.36
VPS4A-201ENST00000254950 FKBP3Q00688 224 aaKnown RBP12.81□□□□□ -0.36
VPS4A-201ENST00000254950 CCDC181Q5TID7 509 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 POTEGQ6S5H5 508 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 POTEEQ6S8J3 1075 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 MOXD1Q6UVY6 613 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 GIMAP8Q8ND71 665 aaPredicted RBP12.81□□□□□ -0.36
VPS4A-201ENST00000254950 SLC17A8Q8NDX2 589 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 CHST13Q8NET6 341 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 FAM212AQ96EL1 285 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 MMP19Q99542 508 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 CELF2O95319 508 aaKnown RBP12.81□□□□□ -0.36
VPS4A-201ENST00000254950 FXR2P51116 673 aaKnown RBP eCLIP12.81□□□□□ -0.36
VPS4A-201ENST00000254950 ADAM9Q13443 819 aa12.81□□□□□ -0.36
VPS4A-201ENST00000254950 GTF3C2Q8WUA4 911 aaPredicted RBP12.81□□□□□ -0.36
VPS4A-201ENST00000254950 JPH2Q9BR39 696 aaPredicted RBP12.81□□□□□ -0.36
VPS4A-201ENST00000254950 GLIS2Q9BZE0 524 aaPredicted RBP12.81□□□□□ -0.36
VPS4A-201ENST00000254950 METTL14Q9HCE5 456 aaKnown RBP12.81□□□□□ -0.36
VPS4A-201ENST00000254950 ARGLU1Q9NWB6 273 aaPredicted RBP12.81□□□□□ -0.36
VPS4A-201ENST00000254950 FZD9O00144 591 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 URI1O94763 535 aaPredicted RBP12.8□□□□□ -0.36
VPS4A-201ENST00000254950 SLC25A27O95847 323 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms