RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 PARP3Q9Y6F1 533 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 RPAP1Q9BWH6 1393 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 BAG2O95816 211 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 DCTN2Q13561 401 aaKnown RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 MAPRE2Q15555 327 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 ARL6IP4Q66PJ3 421 aaKnown RBP5.06□□□□□ -1.6
SCN1A-220ENST00000641603 BTNL9Q6UXG8 535 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 TRPM8Q7Z2W7 1104 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 DDHD1Q8NEL9 900 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 TRIM33Q9UPN9 1127 aa5.06□□□□□ -1.6
SCN1A-220ENST00000641603 STK36Q9NRP7 1315 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 RAD54L2Q9Y4B4 1467 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 TRAF5O00463 557 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 BAG3O95817 575 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 NCAPH2Q6IBW4 605 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 TMOD2Q9NZR1 351 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 RSL24D1Q9UHA3 163 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 ADGRA3Q8IWK6 1321 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 MBD5Q9P267 1494 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 SLC26A4O43511 780 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 TBC1D12O60347 775 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 MARK3P27448 753 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 BASP1P80723 227 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 CCZ1BP86790 482 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 CCZ1P86791 482 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 GSTA3Q16772 222 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 AOC3Q16853 763 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 RASGRP2Q7LDG7 609 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 ZNF513Q8N8E2 541 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 MXD3Q9BW11 206 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 LSG1Q9H089 658 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 SEPT10Q9P0V9 454 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 DBNLQ9UJU6 430 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 CD2APQ9Y5K6 639 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 NLRP9Q7RTR0 991 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 SETD3Q86TU7 594 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 ZFP69BQ9UJL9 534 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 POLR1AO95602 1720 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 FAM13AO94988 1023 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 SERPING1P05155 500 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 SERPINB3P29508 390 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 TFAP4Q01664 338 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 RESTQ13127 1097 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 ITGA9Q13797 1035 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 CEP55Q53EZ4 464 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 NAIF1Q69YI7 327 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 RBM43Q6ZSC3 357 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 C11orf57Q6ZUT1 292 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 TNIP2Q8NFZ5 429 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 APPBP2Q92624 585 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 PHKBQ93100 1093 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 TRAIPQ9BWF2 469 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 NOVA2Q9UNW9 492 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 RSPH10B2B2RC85 870 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 H0YCG3 227 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 DAB1O75553 588 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 KRT37O76014 449 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 WFS1O76024 890 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 RSPH10BP0C881 870 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 SCG2P13521 617 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 XIAPP98170 497 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 KLHL38Q2WGJ6 581 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 USP28Q96RU2 1077 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 WWP1Q9H0M0 922 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 SPC25Q9HBM1 224 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 URB2Q14146 1524 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 LAMC1P11047 1609 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 SERPINB1P30740 379 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 PNOCQ13519 176 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 TUBA3CQ13748 450 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 KIAA2013Q8IYS2 634 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 LINC00301Q8NCQ3 95 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 CDC5LQ99459 802 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 MAK16Q9BXY0 300 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 ZMYND8Q9ULU4 1186 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 ZNF652Q9Y2D9 606 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 DKC1O60832 514 aaKnown RBP eCLIP5.05□□□□□ -1.66e-8■■■■■ 53.6
SCN1A-220ENST00000641603 PDE5AO76074 875 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 VIL1P09327 827 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 TPP2P29144 1249 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 DPCR1Q3MIW9 517 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 NAA35Q5VZE5 725 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 MAP4K1Q92918 833 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 BRIP1Q9BX63 1249 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 CARD9Q9H257 536 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 KCNF1Q9H3M0 494 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 GPR108Q9NPR9 543 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 PRDM15P57071 1507 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 PARP1P09874 1014 aaKnown RBP5.05□□□□□ -1.6
SCN1A-220ENST00000641603 PLA2G4AP47712 749 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 RBL2Q08999 1139 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 KRT27Q7Z3Y8 459 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 TTC1Q99614 292 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 PRR23AA6NEV1 266 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 SYCE1LA8MT33 242 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 ASAP2O43150 1006 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 STARD3NLO95772 234 aa5.05□□□□□ -1.6
SCN1A-220ENST00000641603 ADCY8P40145 1251 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms