RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 GPR75-ASB3A0A0A6YYF3 556 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 TXNDC9O14530 226 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 NDC80O14777 642 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 TRAPPC3O43617 180 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 C6orf89Q6UWU4 347 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 CROCCP3Q8IVE0 287 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 SPICE1Q8N0Z3 855 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 AGGF1Q8N302 714 aaeCLIP6.24□□□□□ -1.41
SCN1A-216ENST00000637968 TTC39CQ8N584 583 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 GDAP1Q8TB36 358 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 PIGOQ8TEQ8 1089 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 PRCCQ92733 491 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-216ENST00000637968 PRDM11Q9NQV5 511 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 HYOU1Q9Y4L1 999 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 ASB3Q9Y575 518 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 NSD2O96028 1365 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 ARHGEF12Q9NZN5 1544 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 SHANK2Q9UPX8 1470 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 CIB2O75838 187 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 WFS1O76024 890 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 EEF2P13639 858 aaKnown RBP6.24□□□□□ -1.41
SCN1A-216ENST00000637968 RGS2P41220 211 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 BLVRAP53004 296 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 PSMD6Q15008 389 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 CFAP70Q5T0N1 1121 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 SLC43A3Q8NBI5 491 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 SUN5Q8TC36 379 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 AENQ8WTP8 325 aaKnown RBP6.24□□□□□ -1.41
SCN1A-216ENST00000637968 STK32AQ8WU08 396 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 NMD3Q96D46 503 aaKnown RBP6.24□□□□□ -1.41
SCN1A-216ENST00000637968 NEK1Q96PY6 1258 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 SYT15Q9BQS2 421 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 NDST4Q9H3R1 872 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 RNPEPL1Q9HAU8 725 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 EPB41L5Q9HCM4 733 aa6.24□□□□□ -1.41
SCN1A-216ENST00000637968 MSH6P52701 1360 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 CDK13Q14004 1512 aaKnown RBP6.23□□□□□ -1.41
SCN1A-216ENST00000637968 A0A1W2PQ27 194 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 A0A1W2PQ64 194 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 A0A1W2PQD8 194 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 AGPSO00116 658 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 IFIT3O14879 490 aaKnown RBP6.23□□□□□ -1.41
SCN1A-216ENST00000637968 DDHD2O94830 711 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 KRT9P35527 623 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 MTF1Q14872 753 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 C6orf183Q5T699 404 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 CEP85Q6P2H3 762 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 PDXDC1Q6P996 788 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 ANKRD13AQ8IZ07 590 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 VPS52Q8N1B4 723 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 MRPL50Q8N5N7 158 aaKnown RBP6.23□□□□□ -1.41
SCN1A-216ENST00000637968 MLKLQ8NB16 471 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 CCT6BQ92526 530 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 RAPGEF5Q92565 580 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 TESK2Q96S53 571 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 TBCCD1Q9NVR7 557 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 NFU1Q9UMS0 254 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 GPC6Q9Y625 555 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-216ENST00000637968 EPN1Q9Y6I3 576 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-216ENST00000637968 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.23□□□□□ -1.41
SCN1A-216ENST00000637968 TNRQ92752 1358 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 SYNMO15061 1565 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 PLCH2O75038 1416 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 NUP160Q12769 1436 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 TTI1O43156 1089 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 HEXIM1O94992 359 aaKnown RBP6.23□□□□□ -1.41
SCN1A-216ENST00000637968 CD97P48960 835 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 DNA2P51530 1060 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 CNPY1Q3B7I2 92 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 LRIG3Q6UXM1 1119 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 RASGRP2Q7LDG7 609 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 TC2NQ8N9U0 490 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 RETREG2Q8NC44 543 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 DPF2Q92785 391 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 SNX27Q96L92 541 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 XPO6Q96QU8 1125 aaKnown RBP6.23□□□□□ -1.41
SCN1A-216ENST00000637968 HAUS7Q99871 368 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 C19orf44Q9H6X5 657 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 GID8Q9NWU2 228 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 SEC63Q9UGP8 760 aaKnown RBP6.23□□□□□ -1.41
SCN1A-216ENST00000637968 PASKQ96RG2 1323 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 ANO9A1A5B4 782 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 PPIP5K2O43314 1243 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 ORC4O43929 436 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 SRGAP2O75044 1071 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 ZCCHC18P0CG32 403 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 TMOD1P28289 359 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 HOXD11P31277 338 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-216ENST00000637968 EPS15P42566 896 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 GALK1P51570 392 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 CSE1LP55060 971 aaKnown RBP6.23□□□□□ -1.41
SCN1A-216ENST00000637968 ITIH3Q06033 890 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 RBL2Q08999 1139 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 PIP4K2CQ8TBX8 421 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 CALML6Q8TD86 181 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 APPBP2Q92624 585 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 ANKRD36BP1Q96IX9 119 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 CEP63Q96MT8 703 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 COQ7Q99807 217 aa6.23□□□□□ -1.41
SCN1A-216ENST00000637968 GGNBP2Q9H3C7 697 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms