RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CYP39A1Q9NYL5 469 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 RBPJLQ9UBG7 517 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 FBXO40Q9UH90 709 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 BTBD19C9JJ37 291 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 MARCH6O60337 910 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 UBA7P41226 1012 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 E2F4Q16254 413 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 CEP55Q53EZ4 464 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 PCNX4Q63HM2 1172 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 DHX58Q96C10 678 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 PAGR1Q9BTK6 254 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 TXNRD2Q9NNW7 524 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 PCDHA12Q9UN75 941 aa20.8■□□□□ 0.92
CLN3-254ENST00000637050 SLFN14P0C7P3 912 aa20.79■□□□□ 0.92
CLN3-254ENST00000637050 CCDC192P0DO97 292 aa20.79■□□□□ 0.92
CLN3-254ENST00000637050 MDM2Q00987 491 aaPredicted RBP20.79■□□□□ 0.92
CLN3-254ENST00000637050 KANK3Q6NY19 840 aa20.79■□□□□ 0.92
CLN3-254ENST00000637050 IQUBQ8NA54 791 aa20.79■□□□□ 0.92
CLN3-254ENST00000637050 IL31RAQ8NI17 732 aa20.79■□□□□ 0.92
CLN3-254ENST00000637050 GTF3C2Q8WUA4 911 aaPredicted RBP20.79■□□□□ 0.92
CLN3-254ENST00000637050 RMDN3Q96TC7 470 aa20.79■□□□□ 0.92
CLN3-254ENST00000637050 MOV10L1Q9BXT6 1211 aaKnown RBP20.79■□□□□ 0.92
CLN3-254ENST00000637050 PXMP2Q9NR77 195 aa20.79■□□□□ 0.92
CLN3-254ENST00000637050 KIAA1468Q9P260 1216 aa20.79■□□□□ 0.92
CLN3-254ENST00000637050 LRWD1Q9UFC0 647 aa20.79■□□□□ 0.92
CLN3-254ENST00000637050 PDHXO00330 501 aa20.78■□□□□ 0.92
CLN3-254ENST00000637050 MEIS1O00470 390 aa20.78■□□□□ 0.92
CLN3-254ENST00000637050 MSH4O15457 936 aa20.78■□□□□ 0.92
CLN3-254ENST00000637050 SLC25A27O95847 323 aa20.78■□□□□ 0.92
CLN3-254ENST00000637050 KARSQ15046 597 aaKnown RBP20.78■□□□□ 0.92
CLN3-254ENST00000637050 PGM5Q15124 567 aa20.78■□□□□ 0.92
CLN3-254ENST00000637050 SAPCD2Q86UD0 394 aa20.78■□□□□ 0.92
CLN3-254ENST00000637050 CABP7Q86V35 215 aa20.78■□□□□ 0.92
CLN3-254ENST00000637050 GJA10Q969M2 543 aa20.78■□□□□ 0.92
CLN3-254ENST00000637050 MXRA8Q9BRK3 442 aa20.78■□□□□ 0.92
CLN3-254ENST00000637050 PDCD2LQ9BRP1 358 aa20.78■□□□□ 0.92
CLN3-254ENST00000637050 MMTAG2Q9BU76 263 aaKnown RBP20.78■□□□□ 0.92
CLN3-254ENST00000637050 DISC1Q9NRI5 854 aa20.78■□□□□ 0.92
CLN3-254ENST00000637050 COPB2P35606 906 aa20.77■□□□□ 0.92
CLN3-254ENST00000637050 SETQ01105 290 aaPredicted RBP20.77■□□□□ 0.92
CLN3-254ENST00000637050 TYRO3Q06418 890 aa20.77■□□□□ 0.92
CLN3-254ENST00000637050 SASS6Q6UVJ0 657 aa20.77■□□□□ 0.92
CLN3-254ENST00000637050 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.77■□□□□ 0.92
CLN3-254ENST00000637050 NIPA1Q7RTP0 329 aa20.77■□□□□ 0.92
CLN3-254ENST00000637050 PLA2G4DQ86XP0 818 aa20.77■□□□□ 0.92
CLN3-254ENST00000637050 RASAL3Q86YV0 1011 aa20.77■□□□□ 0.92
CLN3-254ENST00000637050 PURBQ96QR8 312 aaKnown RBP20.77■□□□□ 0.92
CLN3-254ENST00000637050 CCDC39Q9UFE4 941 aa20.77■□□□□ 0.92
CLN3-254ENST00000637050 HOOK1Q9UJC3 728 aaKnown RBP20.77■□□□□ 0.92
CLN3-254ENST00000637050 PFASO15067 1338 aa20.77■□□□□ 0.91
CLN3-254ENST00000637050 TESPA1A2RU30 521 aaPredicted RBP20.77■□□□□ 0.91
CLN3-254ENST00000637050 POTEMA6NI47 508 aa20.77■□□□□ 0.91
CLN3-254ENST00000637050 CYP2C8P10632 490 aa20.77■□□□□ 0.91
CLN3-254ENST00000637050 BCRP11274 1271 aa20.77■□□□□ 0.91
CLN3-254ENST00000637050 EIF2AK2P19525 551 aaKnown RBP20.77■□□□□ 0.91
CLN3-254ENST00000637050 MRPS9P82933 396 aaKnown RBP20.77■□□□□ 0.91
CLN3-254ENST00000637050 PDXDC2PQ6P474 469 aa20.77■□□□□ 0.91
CLN3-254ENST00000637050 SH3RF1Q7Z6J0 888 aa20.77■□□□□ 0.91
CLN3-254ENST00000637050 CEP57L1Q8IYX8 460 aa20.77■□□□□ 0.91
CLN3-254ENST00000637050 SMC1BQ8NDV3 1235 aa20.77■□□□□ 0.91
CLN3-254ENST00000637050 ERCC4Q92889 916 aaPredicted RBP20.77■□□□□ 0.91
CLN3-254ENST00000637050 UBIAD1Q9Y5Z9 338 aa20.77■□□□□ 0.91
CLN3-254ENST00000637050 FOXN1O15353 648 aa20.76■□□□□ 0.91
CLN3-254ENST00000637050 ITGB5P18084 799 aa20.76■□□□□ 0.91
CLN3-254ENST00000637050 ZNF157P51786 506 aaPredicted RBP20.76■□□□□ 0.91
CLN3-254ENST00000637050 SPIRE1Q08AE8 756 aa20.76■□□□□ 0.91
CLN3-254ENST00000637050 PNOCQ13519 176 aa20.76■□□□□ 0.91
CLN3-254ENST00000637050 Q3C1V9 767 aa20.76■□□□□ 0.91
CLN3-254ENST00000637050 ARHGEF16Q5VV41 709 aa20.76■□□□□ 0.91
CLN3-254ENST00000637050 XRRA1Q6P2D8 792 aa20.76■□□□□ 0.91
CLN3-254ENST00000637050 NCAPG2Q86XI2 1143 aa20.76■□□□□ 0.91
CLN3-254ENST00000637050 NSUN6Q8TEA1 469 aaKnown RBP20.76■□□□□ 0.91
CLN3-254ENST00000637050 CCDC34Q96HJ3 373 aa20.76■□□□□ 0.91
CLN3-254ENST00000637050 TUBE1Q9UJT0 475 aa20.76■□□□□ 0.91
CLN3-254ENST00000637050 ERCC3P19447 782 aa20.75■□□□□ 0.91
CLN3-254ENST00000637050 POSTNQ15063 836 aa20.75■□□□□ 0.91
CLN3-254ENST00000637050 NAALADL2Q58DX5 795 aa20.75■□□□□ 0.91
CLN3-254ENST00000637050 RRAGBQ5VZM2 374 aa20.75■□□□□ 0.91
CLN3-254ENST00000637050 RGMBQ6NW40 437 aa20.75■□□□□ 0.91
CLN3-254ENST00000637050 FAM43AQ8N2R8 423 aa20.75■□□□□ 0.91
CLN3-254ENST00000637050 SLC5A5Q92911 643 aa20.75■□□□□ 0.91
CLN3-254ENST00000637050 UIMC1Q96RL1 719 aa20.75■□□□□ 0.91
CLN3-254ENST00000637050 PTPN18Q99952 460 aa20.75■□□□□ 0.91
CLN3-254ENST00000637050 RBSNQ9H1K0 784 aa20.75■□□□□ 0.91
CLN3-254ENST00000637050 STAT6P42226 847 aa20.74■□□□□ 0.91
CLN3-254ENST00000637050 ERVK-9P63128 1117 aa20.74■□□□□ 0.91
CLN3-254ENST00000637050 ERVK-24P63145 666 aa20.74■□□□□ 0.91
CLN3-254ENST00000637050 ANKRD35Q8N283 1001 aa20.74■□□□□ 0.91
CLN3-254ENST00000637050 SMCR8Q8TEV9 937 aaPredicted RBP20.74■□□□□ 0.91
CLN3-254ENST00000637050 PAGE5Q96GU1 130 aa20.74■□□□□ 0.91
CLN3-254ENST00000637050 ZFP91Q96JP5 570 aaPredicted RBP20.74■□□□□ 0.91
CLN3-254ENST00000637050 JADE2Q9NQC1 790 aa20.74■□□□□ 0.91
CLN3-254ENST00000637050 VAV3Q9UKW4 847 aa20.74■□□□□ 0.91
CLN3-254ENST00000637050 TLL2Q9Y6L7 1015 aa20.74■□□□□ 0.91
CLN3-254ENST00000637050 LCTP09848 1927 aa20.74■□□□□ 0.91
CLN3-254ENST00000637050 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.73■□□□□ 0.91
CLN3-254ENST00000637050 NR3C2P08235 984 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 ARP10275 920 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 KRT79Q5XKE5 535 aa20.73■□□□□ 0.91
CLN3-254ENST00000637050 VSIG10LQ86VR7 867 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms