RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 TNFRSF1AP19438 455 aa5.55□□□□□ -1.52
SCN1A-211ENST00000635893 INF2Q27J81 1249 aa5.55□□□□□ -1.52
SCN1A-211ENST00000635893 MROH9Q5TGP6 573 aa5.55□□□□□ -1.52
SCN1A-211ENST00000635893 GTF2IRD2BQ6EKJ0 949 aa5.55□□□□□ -1.52
SCN1A-211ENST00000635893 IQCEQ6IPM2 695 aa5.55□□□□□ -1.52
SCN1A-211ENST00000635893 GTF2IRD2Q86UP8 949 aa5.55□□□□□ -1.52
SCN1A-211ENST00000635893 RIOX2Q8IUF8 465 aa5.55□□□□□ -1.52
SCN1A-211ENST00000635893 TRIM59Q8IWR1 403 aa5.55□□□□□ -1.52
SCN1A-211ENST00000635893 SEC16BQ96JE7 1060 aa5.55□□□□□ -1.52
SCN1A-211ENST00000635893 C8orf49Q96NF6 230 aa5.55□□□□□ -1.52
SCN1A-211ENST00000635893 KRTAP3-1Q9BYR8 98 aa5.55□□□□□ -1.52
SCN1A-211ENST00000635893 BTG4Q9NY30 223 aa5.55□□□□□ -1.52
SCN1A-211ENST00000635893 INVSQ9Y283 1065 aa5.55□□□□□ -1.52
SCN1A-211ENST00000635893 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-211ENST00000635893 ITGA1P56199 1179 aa5.54□□□□□ -1.52
SCN1A-211ENST00000635893 ZXDAP98168 799 aa5.54□□□□□ -1.52
SCN1A-211ENST00000635893 NCAPHQ15003 741 aa5.54□□□□□ -1.52
SCN1A-211ENST00000635893 PRR31Q5SQ13 230 aa5.54□□□□□ -1.52
SCN1A-211ENST00000635893 MCTP2Q6DN12 878 aa5.54□□□□□ -1.52
SCN1A-211ENST00000635893 MILR1Q7Z6M3 343 aa5.54□□□□□ -1.52
SCN1A-211ENST00000635893 FAM126BQ8IXS8 530 aa5.54□□□□□ -1.52
SCN1A-211ENST00000635893 FAM169BQ8N8A8 192 aa5.54□□□□□ -1.52
SCN1A-211ENST00000635893 NPLOC4Q8TAT6 608 aa5.54□□□□□ -1.52
SCN1A-211ENST00000635893 FRS2Q8WU20 508 aa5.54□□□□□ -1.52
SCN1A-211ENST00000635893 NKX2-4Q9H2Z4 354 aa5.54□□□□□ -1.52
SCN1A-211ENST00000635893 TIMM13Q9Y5L4 95 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-211ENST00000635893 DDX3XO00571 662 aaKnown RBP eCLIP5.53□□□□□ -1.52
SCN1A-211ENST00000635893 MATN3O15232 486 aa5.53□□□□□ -1.52
SCN1A-211ENST00000635893 ZNF20P17024 532 aa5.53□□□□□ -1.52
SCN1A-211ENST00000635893 RPL11P62913 178 aaKnown RBP5.53□□□□□ -1.52
SCN1A-211ENST00000635893 C9orf131Q5VYM1 1079 aa5.53□□□□□ -1.52
SCN1A-211ENST00000635893 E4F1Q66K89 784 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-211ENST00000635893 STK32CQ86UX6 486 aa5.53□□□□□ -1.52
SCN1A-211ENST00000635893 NT5DC4Q86YG4 428 aa5.53□□□□□ -1.52
SCN1A-211ENST00000635893 Q8N1Y9 231 aa5.53□□□□□ -1.52
SCN1A-211ENST00000635893 TXNDC5Q8NBS9 432 aaKnown RBP5.53□□□□□ -1.52
SCN1A-211ENST00000635893 PPP1R14AQ96A00 147 aa5.53□□□□□ -1.52
SCN1A-211ENST00000635893 MRGPRX3Q96LB0 322 aa5.53□□□□□ -1.52
SCN1A-211ENST00000635893 SSBP3Q9BWW4 388 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-211ENST00000635893 STRIP2Q9ULQ0 834 aa5.53□□□□□ -1.52
SCN1A-211ENST00000635893 X6R8D5 127 aa5.53□□□□□ -1.52
SCN1A-211ENST00000635893 ZNF536O15090 1300 aa5.52□□□□□ -1.53
SCN1A-211ENST00000635893 C9orf118A6NHY6 69 aa5.52□□□□□ -1.53
SCN1A-211ENST00000635893 FPR2P25090 351 aa5.52□□□□□ -1.53
SCN1A-211ENST00000635893 STAT5AP42229 794 aa5.52□□□□□ -1.53
SCN1A-211ENST00000635893 GTF2A2P52657 109 aa5.52□□□□□ -1.53
SCN1A-211ENST00000635893 NKX3-2P78367 333 aa5.52□□□□□ -1.53
SCN1A-211ENST00000635893 GLB1LQ6UWU2 654 aa5.52□□□□□ -1.53
SCN1A-211ENST00000635893 CEP68Q76N32 757 aa5.52□□□□□ -1.53
SCN1A-211ENST00000635893 CHST13Q8NET6 341 aa5.52□□□□□ -1.53
SCN1A-211ENST00000635893 TRMT2BQ96GJ1 504 aaKnown RBP5.52□□□□□ -1.53
SCN1A-211ENST00000635893 LCORQ96JN0 433 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-211ENST00000635893 MYO1BO43795 1136 aa5.51□□□□□ -1.53
SCN1A-211ENST00000635893 AKAP8O43823 692 aaKnown RBP5.51□□□□□ -1.53
SCN1A-211ENST00000635893 HDLBPQ00341 1268 aaKnown RBP5.51□□□□□ -1.53
SCN1A-211ENST00000635893 CYP4F3Q08477 520 aa5.51□□□□□ -1.53
SCN1A-211ENST00000635893 SURF1Q15526 300 aa5.51□□□□□ -1.53
SCN1A-211ENST00000635893 CR1LQ2VPA4 569 aa5.51□□□□□ -1.53
SCN1A-211ENST00000635893 DIO2Q92813 273 aa5.51□□□□□ -1.53
SCN1A-211ENST00000635893 DVL3Q92997 716 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-211ENST00000635893 YIPF4Q9BSR8 244 aa5.51□□□□□ -1.53
SCN1A-211ENST00000635893 KRTAP17-1Q9BYP8 105 aa5.51□□□□□ -1.53
SCN1A-211ENST00000635893 ZNF28P17035 718 aa5.5□□□□□ -1.53
SCN1A-211ENST00000635893 HOXC12P31275 282 aa5.5□□□□□ -1.53
SCN1A-211ENST00000635893 BCL6P41182 706 aa5.5□□□□□ -1.53
SCN1A-211ENST00000635893 MFAP1P55081 439 aaKnown RBP5.5□□□□□ -1.53
SCN1A-211ENST00000635893 KCNAB2Q13303 367 aa5.5□□□□□ -1.53
SCN1A-211ENST00000635893 ADAM9Q13443 819 aa5.5□□□□□ -1.53
SCN1A-211ENST00000635893 CHRNA2Q15822 529 aa5.5□□□□□ -1.53
SCN1A-211ENST00000635893 PRAMEF18Q5VWM3 479 aa5.5□□□□□ -1.53
SCN1A-211ENST00000635893 PLEKHH3Q7Z736 793 aa5.5□□□□□ -1.53
SCN1A-211ENST00000635893 CCDC103Q8IW40 242 aa5.5□□□□□ -1.53
SCN1A-211ENST00000635893 ANAPC16Q96DE5 110 aa5.5□□□□□ -1.53
SCN1A-211ENST00000635893 TMEM169Q96HH4 297 aa5.5□□□□□ -1.53
SCN1A-211ENST00000635893 LGR4Q9BXB1 951 aa5.5□□□□□ -1.53
SCN1A-211ENST00000635893 ZNF652Q9Y2D9 606 aa5.5□□□□□ -1.53
SCN1A-211ENST00000635893 COA3Q9Y2R0 106 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-211ENST00000635893 ZBTB7CA1YPR0 619 aa5.49□□□□□ -1.53
SCN1A-211ENST00000635893 HGSO14964 777 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-211ENST00000635893 MEFVO15553 781 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-211ENST00000635893 LAMTOR5O43504 91 aa5.49□□□□□ -1.53
SCN1A-211ENST00000635893 SCG5P05408 212 aa5.49□□□□□ -1.53
SCN1A-211ENST00000635893 LIMS2Q7Z4I7 341 aa5.49□□□□□ -1.53
SCN1A-211ENST00000635893 NLRP10Q86W26 655 aa5.49□□□□□ -1.53
SCN1A-211ENST00000635893 BTN2A2Q8WVV5 523 aa5.49□□□□□ -1.53
SCN1A-211ENST00000635893 TMEFF2Q9UIK5 374 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-211ENST00000635893 H7BY64 318 aa5.48□□□□□ -1.53
SCN1A-211ENST00000635893 ARNTLO00327 626 aa5.48□□□□□ -1.53
SCN1A-211ENST00000635893 B4GALT3O60512 393 aa5.48□□□□□ -1.53
SCN1A-211ENST00000635893 CYP7B1O75881 506 aa5.48□□□□□ -1.53
SCN1A-211ENST00000635893 CPP00450 1065 aa5.48□□□□□ -1.53
SCN1A-211ENST00000635893 CYP1A1P04798 512 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-211ENST00000635893 SNRPB2P08579 225 aaKnown RBP5.48□□□□□ -1.53
SCN1A-211ENST00000635893 IL13P35225 146 aa5.48□□□□□ -1.53
SCN1A-211ENST00000635893 ECI1P42126 302 aa5.48□□□□□ -1.53
SCN1A-211ENST00000635893 TESK1Q15569 626 aa5.48□□□□□ -1.53
SCN1A-211ENST00000635893 ACBD5Q5T8D3 534 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-211ENST00000635893 TOE1Q96GM8 510 aaKnown RBP5.48□□□□□ -1.53
SCN1A-211ENST00000635893 CCDC140Q96MF4 163 aa5.48□□□□□ -1.53
SCN1A-211ENST00000635893 CLIC6Q96NY7 704 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms