RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ZEB2O60315 1214 aa23.77■■□□□ 1.4
CLN3-240ENST00000631023 EVI5O60447 810 aa23.77■■□□□ 1.4
CLN3-240ENST00000631023 STAM2O75886 525 aa23.77■■□□□ 1.4
CLN3-240ENST00000631023 KCNA10Q16322 511 aa23.77■■□□□ 1.4
CLN3-240ENST00000631023 PKN1Q16512 942 aa23.77■■□□□ 1.4
CLN3-240ENST00000631023 TYW1BQ6NUM6 668 aa23.77■■□□□ 1.4
CLN3-240ENST00000631023 XRRA1Q6P2D8 792 aa23.77■■□□□ 1.4
CLN3-240ENST00000631023 KCNV1Q6PIU1 500 aa23.77■■□□□ 1.4
CLN3-240ENST00000631023 EHMT1Q9H9B1 1298 aa23.77■■□□□ 1.4
CLN3-240ENST00000631023 NR2E3Q9Y5X4 410 aa23.77■■□□□ 1.4
CLN3-240ENST00000631023 FRMPD4Q14CM0 1322 aa23.77■■□□□ 1.4
CLN3-240ENST00000631023 SCRN1Q12765 414 aa23.76■■□□□ 1.39
CLN3-240ENST00000631023 FSCN1Q16658 493 aaKnown RBP23.76■■□□□ 1.39
CLN3-240ENST00000631023 UBE2SQ16763 222 aa23.76■■□□□ 1.39
CLN3-240ENST00000631023 FERMT2Q96AC1 680 aa23.76■■□□□ 1.39
CLN3-240ENST00000631023 FOSP01100 380 aaPredicted RBP23.75■■□□□ 1.39
CLN3-240ENST00000631023 ACLYP53396 1101 aa23.75■■□□□ 1.39
CLN3-240ENST00000631023 BRDTQ58F21 947 aaPredicted RBP23.75■■□□□ 1.39
CLN3-240ENST00000631023 IL31RAQ8NI17 732 aa23.75■■□□□ 1.39
CLN3-240ENST00000631023 ESYT2A0FGR8 921 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 MYADML2A6NDP7 307 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 PPFIA3O75145 1194 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 DEXIO95424 95 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 GNPTABQ3T906 1256 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 TMEM63BQ5T3F8 832 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 PCNX4Q63HM2 1172 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 CCSAPQ6IQ19 270 aaPredicted RBP23.74■■□□□ 1.39
CLN3-240ENST00000631023 CCDC62Q6P9F0 684 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 CCDC148Q8NFR7 591 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 OR6J1Q8NGC5 347 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 ZMYND12Q9H0C1 365 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 C6orf50Q9HD87 102 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 PCDHA6Q9UN73 950 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 PCDHA8Q9Y5H6 950 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 MRVI1Q9Y6F6 885 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 CTAGE5O15320 804 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 ASGR1P07306 291 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 TGFB3P10600 412 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 GNA11P29992 359 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 CPT1AP50416 773 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 ATN1P54259 1190 aaPredicted RBP23.74■■□□□ 1.39
CLN3-240ENST00000631023 BEX3Q00994 111 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 SLC39A5Q6ZMH5 540 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 GLT1D1Q96MS3 346 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 KIF2CQ99661 725 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 SH3GLB2Q9NR46 395 aa23.74■■□□□ 1.39
CLN3-240ENST00000631023 A0A1W2PQ45 241 aaPredicted RBP23.73■■□□□ 1.39
CLN3-240ENST00000631023 A0A1W2PQY0 241 aa23.73■■□□□ 1.39
CLN3-240ENST00000631023 IRX5P78411 483 aaPredicted RBP23.73■■□□□ 1.39
CLN3-240ENST00000631023 ME3Q16798 604 aa23.73■■□□□ 1.39
CLN3-240ENST00000631023 LRRC26Q2I0M4 334 aa23.73■■□□□ 1.39
CLN3-240ENST00000631023 MCTP2Q6DN12 878 aa23.73■■□□□ 1.39
CLN3-240ENST00000631023 IL27Q8NEV9 243 aa23.73■■□□□ 1.39
CLN3-240ENST00000631023 VTI1AQ96AJ9 217 aa23.73■■□□□ 1.39
CLN3-240ENST00000631023 STARD7Q9NQZ5 370 aa23.73■■□□□ 1.39
CLN3-240ENST00000631023 DDX41Q9UJV9 622 aaKnown RBP23.73■■□□□ 1.39
CLN3-240ENST00000631023 ARIH2O95376 493 aa23.72■■□□□ 1.39
CLN3-240ENST00000631023 GH1P01241 217 aa23.72■■□□□ 1.39
CLN3-240ENST00000631023 MRPS9P82933 396 aaKnown RBP23.72■■□□□ 1.39
CLN3-240ENST00000631023 AP3B2Q13367 1082 aa23.72■■□□□ 1.39
CLN3-240ENST00000631023 RABEP1Q15276 862 aa23.72■■□□□ 1.39
CLN3-240ENST00000631023 LY6KQ17RY6 165 aa23.72■■□□□ 1.39
CLN3-240ENST00000631023 BICD2Q8TD16 824 aa23.72■■□□□ 1.39
CLN3-240ENST00000631023 LIMCH1Q9UPQ0 1083 aa23.72■■□□□ 1.39
CLN3-240ENST00000631023 ELP1O95163 1332 aa23.71■■□□□ 1.39
CLN3-240ENST00000631023 CABYRO75952 493 aa23.71■■□□□ 1.39
CLN3-240ENST00000631023 PTGS1P23219 599 aa23.71■■□□□ 1.39
CLN3-240ENST00000631023 COPS5Q92905 334 aa23.71■■□□□ 1.39
CLN3-240ENST00000631023 GTF3C6Q969F1 213 aa23.71■■□□□ 1.39
CLN3-240ENST00000631023 RGS20O76081 388 aa23.7■■□□□ 1.38
CLN3-240ENST00000631023 C1orf53Q5VUE5 145 aa23.7■■□□□ 1.38
CLN3-240ENST00000631023 FAM177A1Q8N128 213 aaPredicted RBP23.7■■□□□ 1.38
CLN3-240ENST00000631023 ZFP91Q96JP5 570 aaPredicted RBP23.7■■□□□ 1.38
CLN3-240ENST00000631023 INPP4AQ96PE3 977 aaPredicted RBP23.7■■□□□ 1.38
CLN3-240ENST00000631023 RTEL1Q9NZ71 1219 aa23.7■■□□□ 1.38
CLN3-240ENST00000631023 VPS54Q9P1Q0 977 aa23.7■■□□□ 1.38
CLN3-240ENST00000631023 CLK2P49760 499 aaKnown RBP23.69■■□□□ 1.38
CLN3-240ENST00000631023 LAMC2Q13753 1193 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 NLRX1Q86UT6 975 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 REXO1Q8N1G1 1221 aaKnown RBP23.69■■□□□ 1.38
CLN3-240ENST00000631023 NECAB1Q8N987 351 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 POLR3EQ9NVU0 708 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 DOCK5Q9H7D0 1870 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 STK36Q9NRP7 1315 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 FIBPO43427 364 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 KPNA6O60684 536 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 ICAM3P32942 547 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 NLRP5P59047 1200 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 SNX17Q15036 470 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 PRPF38BQ5VTL8 546 aaKnown RBP23.69■■□□□ 1.38
CLN3-240ENST00000631023 CXCL17Q6UXB2 119 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 DHX37Q8IY37 1157 aaKnown RBP23.69■■□□□ 1.38
CLN3-240ENST00000631023 C7orf61Q8IZ16 206 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 ANO3Q9BYT9 981 aa23.69■■□□□ 1.38
CLN3-240ENST00000631023 A6NJR5 290 aa23.68■■□□□ 1.38
CLN3-240ENST00000631023 XBP1P17861 261 aa23.68■■□□□ 1.38
CLN3-240ENST00000631023 RTP1P59025 263 aa23.68■■□□□ 1.38
CLN3-240ENST00000631023 ARHGAP1Q07960 439 aa23.68■■□□□ 1.38
CLN3-240ENST00000631023 JAKMIP3Q5VZ66 844 aa23.68■■□□□ 1.38
CLN3-240ENST00000631023 WASF1Q92558 559 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms