RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 C16orf45Q96MC5 204 aaPredicted RBP24.67■■□□□ 1.54
PNKP-220ENST00000627232 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.67■■□□□ 1.54
PNKP-220ENST00000627232 CNOT7Q9UIV1 285 aaKnown RBP24.67■■□□□ 1.54
PNKP-220ENST00000627232 USP27XA6NNY8 438 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 GCOM1H8Y6P7 765 aaPredicted RBP24.66■■□□□ 1.54
PNKP-220ENST00000627232 KIF2AO00139 706 aaPredicted RBP24.66■■□□□ 1.54
PNKP-220ENST00000627232 WDR46O15213 610 aaKnown RBP24.66■■□□□ 1.54
PNKP-220ENST00000627232 CTNND1O60716 968 aaKnown RBP24.66■■□□□ 1.54
PNKP-220ENST00000627232 POLR2MP0CAP2 368 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 STK4Q13043 487 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 PRR16Q569H4 304 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 HAUS3Q68CZ6 603 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 KCNK18Q7Z418 384 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 TMEM139Q8IV31 216 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 LPAR1Q92633 364 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 TRIM47Q96LD4 638 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 GLIS2Q9BZE0 524 aaPredicted RBP24.66■■□□□ 1.54
PNKP-220ENST00000627232 DEFB129Q9H1M3 183 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 EHMT1Q9H9B1 1298 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 DOCK1Q14185 1865 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 TRIM49BA6NDI0 452 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 N4BP3O15049 544 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 ARHGAP6O43182 974 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 COBLO75128 1261 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 EGFRP00533 1210 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 HOXA13P31271 388 aaPredicted RBP24.66■■□□□ 1.54
PNKP-220ENST00000627232 PTGER2P43116 358 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 PMS1P54277 932 aaKnown RBP24.66■■□□□ 1.54
PNKP-220ENST00000627232 SPIRE1Q08AE8 756 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 ZYXQ15942 572 aaKnown RBP24.66■■□□□ 1.54
PNKP-220ENST00000627232 ECM1Q16610 540 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 PTPN21Q16825 1174 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 CCDC174Q6PII3 467 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 IRF2BP1Q8IU81 584 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 ERMNQ8TAM6 284 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 GJA10Q969M2 543 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 FEZ1Q99689 392 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 ZNF341Q9BYN7 854 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 KIAA1683Q9H0B3 1180 aa24.66■■□□□ 1.54
PNKP-220ENST00000627232 UQCRHLA0A096LP55 91 aa24.65■■□□□ 1.54
PNKP-220ENST00000627232 AKR1B15C9JRZ8 316 aaPredicted RBP24.65■■□□□ 1.54
PNKP-220ENST00000627232 STX10O60499 249 aa24.65■■□□□ 1.54
PNKP-220ENST00000627232 UQCRHP07919 91 aa24.65■■□□□ 1.54
PNKP-220ENST00000627232 TAL1P17542 331 aaPredicted RBP24.65■■□□□ 1.54
PNKP-220ENST00000627232 PTPN14Q15678 1187 aa24.65■■□□□ 1.54
PNKP-220ENST00000627232 PPFIBP1Q86W92 1011 aa24.65■■□□□ 1.54
PNKP-220ENST00000627232 PANX2Q96RD6 677 aa24.65■■□□□ 1.54
PNKP-220ENST00000627232 DUSP9Q99956 384 aaKnown RBP24.65■■□□□ 1.54
PNKP-220ENST00000627232 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP24.65■■□□□ 1.541e-6■■□□□ 13.1
PNKP-220ENST00000627232 FAM86B1E9PN63 330 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 TUBB4AP04350 444 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 FAM86B2P0C5J1 330 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 FCER1AP12319 257 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 PRELPP51888 382 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 EHHADHQ08426 723 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 KIF4BQ2VIQ3 1234 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 FOXR2Q6PJQ5 311 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 SAMD7Q7Z3H4 446 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 FAM114A1Q8IWE2 563 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 KIAA0895Q8NCT3 520 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 DDX12PQ92771 950 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 BAG1Q99933 345 aaPredicted RBP24.64■■□□□ 1.53
PNKP-220ENST00000627232 SRRTQ9BXP5 876 aaKnown RBP24.64■■□□□ 1.53
PNKP-220ENST00000627232 BMP2KQ9NSY1 1161 aaPredicted RBP24.64■■□□□ 1.53
PNKP-220ENST00000627232 MAGEC2Q9UBF1 373 aaPredicted RBP24.64■■□□□ 1.53
PNKP-220ENST00000627232 HACL1Q9UJ83 578 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 GJA3Q9Y6H8 435 aa24.64■■□□□ 1.53
PNKP-220ENST00000627232 DICER1Q9UPY3 1922 aaKnown RBP24.63■■□□□ 1.53
PNKP-220ENST00000627232 ZNF76P36508 570 aa24.63■■□□□ 1.53
PNKP-220ENST00000627232 TRIM14Q14142 442 aa24.63■■□□□ 1.53
PNKP-220ENST00000627232 LDHDQ86WU2 507 aa24.63■■□□□ 1.53
PNKP-220ENST00000627232 GUF1Q8N442 669 aaKnown RBP24.63■■□□□ 1.53
PNKP-220ENST00000627232 KCTD17Q8N5Z5 321 aa24.63■■□□□ 1.53
PNKP-220ENST00000627232 HOOK2Q96ED9 719 aa24.63■■□□□ 1.53
PNKP-220ENST00000627232 TRMT1Q9NXH9 659 aaKnown RBP24.63■■□□□ 1.53
PNKP-220ENST00000627232 TAB2Q9NYJ8 693 aa24.63■■□□□ 1.53
PNKP-220ENST00000627232 PAXBP1Q9Y5B6 917 aa24.63■■□□□ 1.53
PNKP-220ENST00000627232 MSH4O15457 936 aa24.62■■□□□ 1.53
PNKP-220ENST00000627232 CFBP00751 764 aa24.62■■□□□ 1.53
PNKP-220ENST00000627232 TBC1D10BQ4KMP7 808 aaPredicted RBP24.62■■□□□ 1.53
PNKP-220ENST00000627232 DCAF15Q66K64 600 aa24.62■■□□□ 1.53
PNKP-220ENST00000627232 CENPPQ6IPU0 288 aa24.62■■□□□ 1.53
PNKP-220ENST00000627232 DYMQ7RTS9 669 aa24.62■■□□□ 1.53
PNKP-220ENST00000627232 CSGALNACT2Q8N6G5 542 aa24.62■■□□□ 1.53
PNKP-220ENST00000627232 DNAJC19Q96DA6 116 aa24.62■■□□□ 1.53
PNKP-220ENST00000627232 CCDC51Q96ER9 411 aa24.62■■□□□ 1.53
PNKP-220ENST00000627232 VPS16Q9H269 839 aa24.62■■□□□ 1.53
PNKP-220ENST00000627232 KIAA1024Q9UPX6 916 aa24.62■■□□□ 1.53
PNKP-220ENST00000627232 IGLV3-22A0A075B6J6 115 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 ICAM1P05362 532 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 TPM1P09493 284 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 ADKP55263 362 aaKnown RBP24.61■■□□□ 1.53
PNKP-220ENST00000627232 GOLGA8FQ08AF8 430 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 GOLGA8DPQ0D2H9 430 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 CEP135Q66GS9 1140 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 CCDC84Q86UT8 332 aaPredicted RBP24.61■■□□□ 1.53
PNKP-220ENST00000627232 PRPF38AQ8NAV1 312 aaKnown RBP24.61■■□□□ 1.53
PNKP-220ENST00000627232 PPP1R13BQ96KQ4 1090 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 SLF1Q9BQI6 1058 aa24.61■■□□□ 1.53
PNKP-220ENST00000627232 NAA15Q9BXJ9 866 aaKnown RBP24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms