RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 FPGSQ05932 587 aa17.11■□□□□ 0.33
LINC00643-206ENST00000623985 ERICH6BQ5W0A0 696 aa17.11■□□□□ 0.33
LINC00643-206ENST00000623985 SYNE3Q6ZMZ3 975 aa17.11■□□□□ 0.33
LINC00643-206ENST00000623985 TMTC3Q6ZXV5 915 aa17.11■□□□□ 0.33
LINC00643-206ENST00000623985 FANCBQ8NB91 859 aa17.11■□□□□ 0.33
LINC00643-206ENST00000623985 KCNB2Q92953 911 aa17.11■□□□□ 0.33
LINC00643-206ENST00000623985 MTG1Q9BT17 334 aaPredicted RBP17.11■□□□□ 0.33
LINC00643-206ENST00000623985 PTPRSQ13332 1948 aa17.1■□□□□ 0.33
LINC00643-206ENST00000623985 CCND2P30279 289 aa17.1■□□□□ 0.33
LINC00643-206ENST00000623985 HSPA4P34932 840 aa17.1■□□□□ 0.33
LINC00643-206ENST00000623985 ARHGAP1Q07960 439 aa17.1■□□□□ 0.33
LINC00643-206ENST00000623985 LY6KQ17RY6 165 aa17.1■□□□□ 0.33
LINC00643-206ENST00000623985 KCNV1Q6PIU1 500 aa17.1■□□□□ 0.33
LINC00643-206ENST00000623985 RAB11FIP4Q86YS3 637 aa17.1■□□□□ 0.33
LINC00643-206ENST00000623985 IL31RAQ8NI17 732 aa17.1■□□□□ 0.33
LINC00643-206ENST00000623985 EMID1Q96A84 441 aaPredicted RBP17.1■□□□□ 0.33
LINC00643-206ENST00000623985 TCEANC2Q96MN5 208 aa17.1■□□□□ 0.33
LINC00643-206ENST00000623985 RBM28Q9NW13 759 aaKnown RBP17.1■□□□□ 0.33
LINC00643-206ENST00000623985 MRVI1Q9Y6F6 885 aa17.1■□□□□ 0.33
LINC00643-206ENST00000623985 CNTNAP5Q8WYK1 1306 aa17.1■□□□□ 0.33
LINC00643-206ENST00000623985 CDH23Q9H251 3354 aa17.1■□□□□ 0.33
LINC00643-206ENST00000623985 PIK3CDO00329 1044 aa17.09■□□□□ 0.33
LINC00643-206ENST00000623985 B4GALT4O60513 344 aa17.09■□□□□ 0.33
LINC00643-206ENST00000623985 MMP3P08254 477 aa17.09■□□□□ 0.33
LINC00643-206ENST00000623985 MYCLP12524 364 aaPredicted RBP17.09■□□□□ 0.33
LINC00643-206ENST00000623985 SHHQ15465 462 aa17.09■□□□□ 0.33
LINC00643-206ENST00000623985 C9orf50Q5SZB4 431 aa17.09■□□□□ 0.33
LINC00643-206ENST00000623985 MFSD5Q6N075 450 aa17.09■□□□□ 0.33
LINC00643-206ENST00000623985 VSIG10LQ86VR7 867 aa17.09■□□□□ 0.33
LINC00643-206ENST00000623985 FCHSD1Q86WN1 690 aa17.09■□□□□ 0.33
LINC00643-206ENST00000623985 CUL5Q93034 780 aa17.09■□□□□ 0.33
LINC00643-206ENST00000623985 ALDH8A1Q9H2A2 487 aaPredicted RBP17.09■□□□□ 0.33
LINC00643-206ENST00000623985 PPP4R2Q9NY27 417 aa17.09■□□□□ 0.33
LINC00643-206ENST00000623985 DDX41Q9UJV9 622 aaKnown RBP17.09■□□□□ 0.33
LINC00643-206ENST00000623985 ZBTB43O43298 467 aa17.08■□□□□ 0.32
LINC00643-206ENST00000623985 EPB41L2O43491 1005 aaKnown RBP17.08■□□□□ 0.32
LINC00643-206ENST00000623985 STAM2O75886 525 aa17.08■□□□□ 0.32
LINC00643-206ENST00000623985 RGS20O76081 388 aa17.08■□□□□ 0.32
LINC00643-206ENST00000623985 RCAN1P53805 252 aa17.08■□□□□ 0.32
LINC00643-206ENST00000623985 PPIGQ13427 754 aaKnown RBP eCLIP17.08■□□□□ 0.32
LINC00643-206ENST00000623985 CMTR1Q8N1G2 835 aaKnown RBP17.08■□□□□ 0.32
LINC00643-206ENST00000623985 AFG1LQ8WV93 481 aa17.08■□□□□ 0.32
LINC00643-206ENST00000623985 HIPK3Q9H422 1215 aa17.08■□□□□ 0.32
LINC00643-206ENST00000623985 SNX14Q9Y5W7 946 aa17.08■□□□□ 0.32
LINC00643-206ENST00000623985 NID2Q14112 1375 aa17.07■□□□□ 0.32
LINC00643-206ENST00000623985 RTN1Q16799 776 aa17.07■□□□□ 0.32
LINC00643-206ENST00000623985 NFRKBQ6P4R8 1299 aa17.07■□□□□ 0.32
LINC00643-206ENST00000623985 TMEM199Q8N511 208 aa17.07■□□□□ 0.32
LINC00643-206ENST00000623985 TET1Q8NFU7 2136 aa17.07■□□□□ 0.32
LINC00643-206ENST00000623985 PPTC7Q8NI37 304 aa17.07■□□□□ 0.32
LINC00643-206ENST00000623985 SMARCC2Q8TAQ2 1214 aa17.07■□□□□ 0.32
LINC00643-206ENST00000623985 PPP1R12CQ9BZL4 782 aa17.07■□□□□ 0.32
LINC00643-206ENST00000623985 BRPF3Q9ULD4 1205 aa17.07■□□□□ 0.32
LINC00643-206ENST00000623985 MYH9P35579 1960 aaKnown RBP17.07■□□□□ 0.32
LINC00643-206ENST00000623985 SIP14410 1827 aa17.07■□□□□ 0.32
LINC00643-206ENST00000623985 KLF18A0A0U1RQI7 1052 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 MEIS2O14770 477 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 CENPBP07199 599 aaPredicted RBP17.06■□□□□ 0.32
LINC00643-206ENST00000623985 SUPT20HL2P0C7V6 817 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 TGFB3P10600 412 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 EPHB4P54760 987 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 FGD1P98174 961 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 PTPN11Q06124 597 aaPredicted RBP17.06■□□□□ 0.32
LINC00643-206ENST00000623985 LAMC2Q13753 1193 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 DGKDQ16760 1214 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 NBPF20Q3BBV1 942 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 GNPTABQ3T906 1256 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 BLOC1S2Q6QNY1 142 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 DHX37Q8IY37 1157 aaKnown RBP17.06■□□□□ 0.32
LINC00643-206ENST00000623985 CCDC82Q8N4S0 544 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 RNPC3Q96LT9 517 aaKnown RBP17.06■□□□□ 0.32
LINC00643-206ENST00000623985 JAKMIP1Q96N16 626 aaKnown RBP17.06■□□□□ 0.32
LINC00643-206ENST00000623985 TRPV6Q9H1D0 765 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 MICAL3Q7RTP6 2002 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 LOXHD1Q8IVV2 1947 aa17.06■□□□□ 0.32
LINC00643-206ENST00000623985 EYSQ5T1H1 3165 aa17.05■□□□□ 0.32
LINC00643-206ENST00000623985 GOLGA8AA7E2F4 631 aa17.05■□□□□ 0.32
LINC00643-206ENST00000623985 GOLGA8BA8MQT2 603 aa17.05■□□□□ 0.32
LINC00643-206ENST00000623985 CASTP20810 708 aaKnown RBP17.05■□□□□ 0.32
LINC00643-206ENST00000623985 UBA1P22314 1058 aaKnown RBP17.05■□□□□ 0.32
LINC00643-206ENST00000623985 MRPS9P82933 396 aaKnown RBP17.05■□□□□ 0.32
LINC00643-206ENST00000623985 FAM47CQ5HY64 1035 aa17.05■□□□□ 0.32
LINC00643-206ENST00000623985 PCNX4Q63HM2 1172 aa17.05■□□□□ 0.32
LINC00643-206ENST00000623985 USP17L6PQ6QN14 398 aa17.05■□□□□ 0.32
LINC00643-206ENST00000623985 INPP4AQ96PE3 977 aaPredicted RBP17.05■□□□□ 0.32
LINC00643-206ENST00000623985 NOC4LQ9BVI4 516 aaKnown RBP17.05■□□□□ 0.32
LINC00643-206ENST00000623985 KATNAL1Q9BW62 490 aa17.05■□□□□ 0.32
LINC00643-206ENST00000623985 PSTPIP2Q9H939 334 aa17.05■□□□□ 0.32
LINC00643-206ENST00000623985 TRMT13Q9NUP7 481 aaKnown RBP17.05■□□□□ 0.32
LINC00643-206ENST00000623985 hCG_1642624A0A1W2PR95 340 aa17.04■□□□□ 0.32
LINC00643-206ENST00000623985 hCG_1984214I3L0E3 225 aa17.04■□□□□ 0.32
LINC00643-206ENST00000623985 GGPS1O95749 300 aa17.04■□□□□ 0.32
LINC00643-206ENST00000623985 F2P00734 622 aa17.04■□□□□ 0.32
LINC00643-206ENST00000623985 HOXD8P13378 290 aaPredicted RBP17.04■□□□□ 0.32
LINC00643-206ENST00000623985 CSF2RAP15509 400 aa17.04■□□□□ 0.32
LINC00643-206ENST00000623985 PSMA5P28066 241 aa17.04■□□□□ 0.32
LINC00643-206ENST00000623985 CYP2C18P33260 490 aa17.04■□□□□ 0.32
LINC00643-206ENST00000623985 FUT2Q10981 343 aa17.04■□□□□ 0.32
LINC00643-206ENST00000623985 CELF3Q5SZQ8 465 aaKnown RBP17.04■□□□□ 0.32
LINC00643-206ENST00000623985 PPP1R18Q6NYC8 613 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms