RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TEKT1Q969V4 418 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 ZNF148Q9UQR1 794 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 SPHKAPQ2M3C7 1700 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 TMEM232C9JQI7 657 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 HNRNPCP07910 306 aaKnown RBP eCLIP9.66□□□□□ -0.86
VCL-206ENST00000623461 MRPS35P82673 323 aaKnown RBP9.66□□□□□ -0.86
VCL-206ENST00000623461 PSMD2Q13200 908 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 SEMA3FQ13275 785 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 PTPN21Q16825 1174 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 SGO2Q562F6 1265 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 NEK8Q86SG6 692 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 SPATA5Q8NB90 893 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 CDKL2Q92772 493 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 KIF2CQ99661 725 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 PFDN4Q9NQP4 134 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 MROH5Q6ZUA9 1318 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 IPO5O00410 1097 aaKnown RBP9.66□□□□□ -0.86
VCL-206ENST00000623461 ITGA6P23229 1130 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 YWHAEP62258 255 aaKnown RBP9.66□□□□□ -0.86
VCL-206ENST00000623461 MRPS9P82933 396 aaKnown RBP9.66□□□□□ -0.86
VCL-206ENST00000623461 KLC1Q07866 573 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 HOOK2Q96ED9 719 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 THOC1Q96FV9 657 aaKnown RBP9.66□□□□□ -0.86
VCL-206ENST00000623461 ATP8A2Q9NTI2 1148 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 HAUS2Q9NVX0 235 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.66□□□□□ -0.86
VCL-206ENST00000623461 HPCAL4Q9UM19 191 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 IFNB1P01574 187 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 EEF1DP29692 281 aaKnown RBP9.66□□□□□ -0.86
VCL-206ENST00000623461 VPS41P49754 854 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 CAV1Q03135 178 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 ASPHQ12797 758 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 RPS6KA2Q15349 733 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 FBXO31Q5XUX0 539 aaPredicted RBP9.66□□□□□ -0.86
VCL-206ENST00000623461 LRRC37BQ96QE4 947 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 TRIM55Q9BYV6 548 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 SATB2Q9UPW6 733 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 NEURL1BA8MQ27 555 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 TRPA1O75762 1119 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 AFPP02771 609 aaKnown RBP9.66□□□□□ -0.86
VCL-206ENST00000623461 H2AFXP16104 143 aaPredicted RBP9.66□□□□□ -0.86
VCL-206ENST00000623461 TECP42680 631 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 SLC8A3P57103 927 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 MMEL1Q495T6 779 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 IFNL3Q8IZI9 196 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 FAM212AQ96EL1 285 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 CCT8L2Q96SF2 557 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 EPC1Q9H2F5 836 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 GOLPH3LQ9H4A5 285 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 ZFP69BQ9UJL9 534 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 CHD1O14646 1710 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 CEP152O94986 1710 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 LGALS16A8MUM7 142 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 PCYT1AP49585 367 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 RBM26Q5T8P6 1007 aaKnown RBP9.66□□□□□ -0.86
VCL-206ENST00000623461 SLFN12Q8IYM2 578 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 EDC3Q96F86 508 aaKnown RBP9.66□□□□□ -0.86
VCL-206ENST00000623461 FAM96AQ9H5X1 160 aa9.66□□□□□ -0.86
VCL-206ENST00000623461 TTC37Q6PGP7 1564 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 SMCO2A6NFE2 343 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 SLCO1A2P46721 670 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 FKBP3Q00688 224 aaKnown RBP9.65□□□□□ -0.86
VCL-206ENST00000623461 ZNF790Q6PG37 636 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 L2HGDHQ9H9P8 463 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 COL4A3BPQ9Y5P4 624 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 MT-ND3P03897 115 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 SLC12A2P55011 1212 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 APOA5Q6Q788 366 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 NYXQ9GZU5 481 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 TMEM51Q9NW97 253 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 DENND4BO75064 1496 aaPredicted RBP9.65□□□□□ -0.86
VCL-206ENST00000623461 ZFXP17010 805 aaPredicted RBP9.65□□□□□ -0.86
VCL-206ENST00000623461 PLA2G4AP47712 749 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 ZNF354CQ86Y25 554 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 DYDC2Q96IM9 177 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 NLRP3Q96P20 1036 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 SUGP1Q8IWZ8 645 aaKnown RBP9.65□□□□□ -0.86
VCL-206ENST00000623461 SMYD4Q8IYR2 804 aaPredicted RBP9.65□□□□□ -0.86
VCL-206ENST00000623461 HELBQ8NG08 1087 aaPredicted RBP9.65□□□□□ -0.86
VCL-206ENST00000623461 KCNV2Q8TDN2 545 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 WDR24Q96S15 920 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 NDUFB9Q9Y6M9 179 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 EXOC1LA0A1B0GW35 172 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 PDE8AO60658 829 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 SRGAP2O75044 1071 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 IRAK1P51617 712 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 PMS2P54278 862 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 DPH6Q7L8W6 267 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 ARPP21Q9UBL0 812 aaPredicted RBP9.65□□□□□ -0.86
VCL-206ENST00000623461 KIAA1210Q9ULL0 1709 aa9.65□□□□□ -0.86
VCL-206ENST00000623461 CDR2Q01850 454 aa9.65□□□□□ -0.87
VCL-206ENST00000623461 LRRC63Q05C16 580 aa9.65□□□□□ -0.87
VCL-206ENST00000623461 IQCB1Q15051 598 aa9.65□□□□□ -0.87
VCL-206ENST00000623461 MAP7D3Q8IWC1 876 aa9.65□□□□□ -0.87
VCL-206ENST00000623461 NUDCD1Q96RS6 583 aa9.65□□□□□ -0.87
VCL-206ENST00000623461 TRAIPQ9BWF2 469 aa9.65□□□□□ -0.87
VCL-206ENST00000623461 MESDQ14696 234 aa9.65□□□□□ -0.87
VCL-206ENST00000623461 PTPROQ16827 1216 aa9.65□□□□□ -0.87
VCL-206ENST00000623461 GRAMD1BQ3KR37 738 aa9.65□□□□□ -0.87
VCL-206ENST00000623461 C16orf87Q6PH81 154 aa9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms