RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 TSPYL2Q9H2G4 693 aaPredicted RBP27.75■■■□□ 2.03
CPSF1-214ENST00000622776 TRANK1O15050 2925 aa27.75■■■□□ 2.03
CPSF1-214ENST00000622776 RFXAPO00287 272 aa27.74■■■□□ 2.03
CPSF1-214ENST00000622776 CASTP20810 708 aaKnown RBP27.74■■■□□ 2.03
CPSF1-214ENST00000622776 ARHGEF16Q5VV41 709 aa27.74■■■□□ 2.03
CPSF1-214ENST00000622776 GDF6Q6KF10 455 aaPredicted RBP27.74■■■□□ 2.03
CPSF1-214ENST00000622776 CCDC155Q8N6L0 562 aa27.74■■■□□ 2.03
CPSF1-214ENST00000622776 CAGE1Q8TC20 777 aa27.74■■■□□ 2.03
CPSF1-214ENST00000622776 CTAGE1Q96RT6 745 aa27.74■■■□□ 2.03
CPSF1-214ENST00000622776 KRT23Q9C075 422 aa27.74■■■□□ 2.03
CPSF1-214ENST00000622776 CTNNA3Q9UI47 895 aa27.74■■■□□ 2.03
CPSF1-214ENST00000622776 TANC1Q9C0D5 1861 aa27.74■■■□□ 2.03
CPSF1-214ENST00000622776 MYH6P13533 1939 aa27.73■■■□□ 2.03
CPSF1-214ENST00000622776 EIF2AK2P19525 551 aaKnown RBP27.73■■■□□ 2.03
CPSF1-214ENST00000622776 HERC6Q8IVU3 1022 aa27.73■■■□□ 2.03
CPSF1-214ENST00000622776 IL27Q8NEV9 243 aa27.73■■■□□ 2.03
CPSF1-214ENST00000622776 AFAP1L1Q8TED9 768 aa27.73■■■□□ 2.03
CPSF1-214ENST00000622776 CERS4Q9HA82 394 aa27.73■■■□□ 2.03
CPSF1-214ENST00000622776 DDX41Q9UJV9 622 aaKnown RBP27.73■■■□□ 2.03
CPSF1-214ENST00000622776 KIF28PB7ZC32 967 aa27.72■■■□□ 2.03
CPSF1-214ENST00000622776 EIF3JO75822 258 aaKnown RBP27.72■■■□□ 2.03
CPSF1-214ENST00000622776 BAIAP3O94812 1187 aa27.72■■■□□ 2.03
CPSF1-214ENST00000622776 POU3F3P20264 500 aaPredicted RBP27.72■■■□□ 2.03
CPSF1-214ENST00000622776 DGKDQ16760 1214 aa27.72■■■□□ 2.03
CPSF1-214ENST00000622776 UHRF1Q96T88 793 aaPredicted RBP27.72■■■□□ 2.03
CPSF1-214ENST00000622776 UBAC1Q9BSL1 405 aa27.72■■■□□ 2.03
CPSF1-214ENST00000622776 CNNM2Q9H8M5 875 aa27.72■■■□□ 2.03
CPSF1-214ENST00000622776 KIAA1217Q5T5P2 1943 aa27.72■■■□□ 2.03
CPSF1-214ENST00000622776 CFBP00751 764 aa27.71■■■□□ 2.03
CPSF1-214ENST00000622776 NR3C2P08235 984 aa27.71■■■□□ 2.03
CPSF1-214ENST00000622776 STAG2Q8N3U4 1231 aa27.71■■■□□ 2.03
CPSF1-214ENST00000622776 PXMP2Q9NR77 195 aa27.71■■■□□ 2.03
CPSF1-214ENST00000622776 MTCH2Q9Y6C9 303 aa27.71■■■□□ 2.03
CPSF1-214ENST00000622776 EPOPA6NHQ4 379 aa27.7■■■□□ 2.02
CPSF1-214ENST00000622776 GTPBP6O43824 516 aaPredicted RBP27.7■■■□□ 2.02
CPSF1-214ENST00000622776 ARHGEF15O94989 841 aa27.7■■■□□ 2.02
CPSF1-214ENST00000622776 SELPP16109 830 aa27.7■■■□□ 2.02
CPSF1-214ENST00000622776 TAP1Q03518 808 aa27.7■■■□□ 2.02
CPSF1-214ENST00000622776 GPNMBQ14956 572 aa27.7■■■□□ 2.02
CPSF1-214ENST00000622776 IFIT1BQ5T764 474 aaKnown RBP27.7■■■□□ 2.02
CPSF1-214ENST00000622776 DHX38Q92620 1227 aaKnown RBP27.7■■■□□ 2.02
CPSF1-214ENST00000622776 EMID1Q96A84 441 aaPredicted RBP27.7■■■□□ 2.02
CPSF1-214ENST00000622776 AMNQ9BXJ7 453 aa27.7■■■□□ 2.02
CPSF1-214ENST00000622776 GTF2IRD1Q9UHL9 959 aa27.7■■■□□ 2.02
CPSF1-214ENST00000622776 OPLAHO14841 1288 aa27.69■■■□□ 2.02
CPSF1-214ENST00000622776 KCNJ6P48051 423 aa27.69■■■□□ 2.02
CPSF1-214ENST00000622776 LAMC2Q13753 1193 aa27.69■■■□□ 2.02
CPSF1-214ENST00000622776 ARNTL2Q8WYA1 636 aa27.69■■■□□ 2.02
CPSF1-214ENST00000622776 HDAC6Q9UBN7 1215 aa27.69■■■□□ 2.02
CPSF1-214ENST00000622776 MRVI1Q9Y6F6 885 aa27.69■■■□□ 2.02
CPSF1-214ENST00000622776 KLRF2D3W0D1 207 aa27.68■■■□□ 2.02
CPSF1-214ENST00000622776 PSEN2P49810 448 aa27.68■■■□□ 2.02
CPSF1-214ENST00000622776 HSD17B4P51659 736 aa27.68■■■□□ 2.02
CPSF1-214ENST00000622776 GHRHRQ02643 423 aa27.68■■■□□ 2.02
CPSF1-214ENST00000622776 RBL2Q08999 1139 aa27.68■■■□□ 2.02
CPSF1-214ENST00000622776 SKIV2LQ15477 1246 aaKnown RBP27.68■■■□□ 2.02
CPSF1-214ENST00000622776 LRRC8DQ7L1W4 858 aa27.68■■■□□ 2.02
CPSF1-214ENST00000622776 C7orf31Q8N865 590 aa27.68■■■□□ 2.02
CPSF1-214ENST00000622776 ALG1Q9BT22 464 aa27.68■■■□□ 2.02
CPSF1-214ENST00000622776 REV3LO60673 3130 aa27.67■■■□□ 2.02
CPSF1-214ENST00000622776 BRWD1Q9NSI6 2320 aa27.67■■■□□ 2.02
CPSF1-214ENST00000622776 TFF2Q03403 129 aa27.67■■■□□ 2.02
CPSF1-214ENST00000622776 SEC23AQ15436 765 aa27.67■■■□□ 2.02
CPSF1-214ENST00000622776 DHX37Q8IY37 1157 aaKnown RBP27.67■■■□□ 2.02
CPSF1-214ENST00000622776 PPTC7Q8NI37 304 aa27.67■■■□□ 2.02
CPSF1-214ENST00000622776 MTMR8Q96EF0 704 aa27.67■■■□□ 2.02
CPSF1-214ENST00000622776 KATNAL1Q9BW62 490 aa27.67■■■□□ 2.02
CPSF1-214ENST00000622776 TCF20Q9UGU0 1960 aaKnown RBP27.67■■■□□ 2.02
CPSF1-214ENST00000622776 TLL1O43897 1013 aa27.66■■■□□ 2.02
CPSF1-214ENST00000622776 PPP1R11O60927 126 aaPredicted RBP27.66■■■□□ 2.02
CPSF1-214ENST00000622776 PARNO95453 639 aaKnown RBP27.66■■■□□ 2.02
CPSF1-214ENST00000622776 BMP1P13497 986 aa27.66■■■□□ 2.02
CPSF1-214ENST00000622776 WDR5P61964 334 aaKnown RBP27.66■■■□□ 2.02
CPSF1-214ENST00000622776 MFSD10Q14728 455 aa27.66■■■□□ 2.02
CPSF1-214ENST00000622776 EXOC6Q8TAG9 804 aa27.66■■■□□ 2.02
CPSF1-214ENST00000622776 PDCD2LQ9BRP1 358 aa27.66■■■□□ 2.02
CPSF1-214ENST00000622776 IL25Q9H293 177 aa27.66■■■□□ 2.02
CPSF1-214ENST00000622776 MAP3K20Q9NYL2 800 aaKnown RBP27.66■■■□□ 2.02
CPSF1-214ENST00000622776 BAZ2BQ9UIF8 2168 aaKnown RBP27.65■■■□□ 2.02
CPSF1-214ENST00000622776 HAS3O00219 553 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 ZBTB5O15062 677 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 F2P00734 622 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 CXCL10P02778 98 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 ZNF286BP0CG31 522 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 CKBP12277 381 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 KIAA0753Q2KHM9 967 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 AAK1Q2M2I8 961 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 KRT40Q6A162 431 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 CNKSR3Q6P9H4 555 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 CYB5R4Q7L1T6 521 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 MAD2L2Q9UI95 211 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 PCDHA1Q9Y5I3 950 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 MYH7BA7E2Y1 1941 aa27.65■■■□□ 2.02
CPSF1-214ENST00000622776 NBNO60934 754 aa27.64■■■□□ 2.02
CPSF1-214ENST00000622776 RGS20O76081 388 aa27.64■■■□□ 2.02
CPSF1-214ENST00000622776 MYCLP12524 364 aaPredicted RBP27.64■■■□□ 2.02
CPSF1-214ENST00000622776 STOX1Q6ZVD7 989 aa27.64■■■□□ 2.02
CPSF1-214ENST00000622776 PALM3A6NDB9 673 aaPredicted RBP27.63■■■□□ 2.01
CPSF1-214ENST00000622776 PPFIA4O75335 1185 aa27.63■■■□□ 2.01
CPSF1-214ENST00000622776 HOXD8P13378 290 aaPredicted RBP27.63■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms