RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 DLEC1Q9Y238 1755 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 NRAPQ86VF7 1730 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 LRRC53A6NM62 1247 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 TRAF5O00463 557 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 TDRD12Q587J7 1177 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 UBXN6Q9BZV1 441 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 MAGEF1Q9HAY2 307 aa14.37□□□□□ -0.11
CCDC88A-214ENST00000621814 SRCAPQ6ZRS2 3230 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 BUB1O43683 1085 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 PPP1R11O60927 126 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 EIF3JO75822 258 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 MEX3CQ5U5Q3 659 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 UNC13DQ70J99 1090 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 ARHGAP20Q9P2F6 1191 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 ZNF219Q9P2Y4 722 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 SERPINB13Q9UIV8 391 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 TNRC6CQ9HCJ0 1690 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 E9PMD0 336 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 PDE2AO00408 941 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 EDIL3O43854 480 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 RBM5P52756 815 aaKnown RBP eCLIP14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 MEA1Q16626 185 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 CCDC40Q4G0X9 1142 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 ZSCAN29Q8IWY8 852 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 RAD54LQ92698 747 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 ZC3H12CQ9C0D7 883 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 PSTPIP2Q9H939 334 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 PCDHA12Q9UN75 941 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 CAPN6Q9Y6Q1 641 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 LAMB1P07942 1786 aa14.36□□□□□ -0.11
CCDC88A-214ENST00000621814 TTLL1O95922 423 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 GFPT1Q06210 699 aaPredicted RBP14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 CENPPQ6IPU0 288 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 TMC4Q7Z404 712 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 HNRNPLLQ8WVV9 542 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 FGFBP2Q9BYJ0 223 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 EHD2Q9NZN4 543 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 KIAA1024Q9UPX6 916 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 PCDHA13Q9Y5I0 950 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 CASZ1Q86V15 1759 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 A0A0U1RQG5 324 aaPredicted RBP14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 FAM170AA1A519 330 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 EIF3CLB5ME19 914 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 KRT18P05783 430 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 KIF11P52732 1056 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 RIN2Q8WYP3 895 aaPredicted RBP14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 EIF3CQ99613 913 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 PCDHAC2Q9Y5I4 1007 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 NCK2O43639 380 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 USO1O60763 962 aaKnown RBP14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 STAT3P40763 770 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 RASSF7Q02833 373 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 NFIAQ12857 509 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 ZFPM1Q8IX07 1006 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 CERS5Q8N5B7 392 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 RETREG2Q8NC44 543 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 EHBP1Q8NDI1 1231 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 TBC1D22AQ8WUA7 517 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 GBP3Q9H0R5 595 aa14.35□□□□□ -0.11
CCDC88A-214ENST00000621814 BBOX1O75936 387 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 TAL1P17542 331 aaPredicted RBP14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 VAV2P52735 878 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 USP14P54578 494 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 SLC7A5Q01650 507 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 IKQ13123 557 aaPredicted RBP14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 ASPRV1Q53RT3 343 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 CCDC170Q8IYT3 715 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 COG1Q8WTW3 980 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 CUL5Q93034 780 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 TSG101Q99816 390 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 KCNQ5Q9NR82 932 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 PANK4Q9NVE7 773 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 PNMA6FA0A0J9YX94 578 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 CAPN2P17655 700 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 NFRKBQ6P4R8 1299 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 ERGIC2Q96RQ1 377 aa14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.34□□□□□ -0.11
CCDC88A-214ENST00000621814 TULP1O00294 542 aaPredicted RBP14.33□□□□□ -0.11
CCDC88A-214ENST00000621814 RGL2O15211 777 aa14.33□□□□□ -0.11
CCDC88A-214ENST00000621814 FXR2P51116 673 aaKnown RBP eCLIP14.33□□□□□ -0.112e-7■■□□□ 11.5
CCDC88A-214ENST00000621814 RNASE9P60153 205 aaKnown RBP14.33□□□□□ -0.11
CCDC88A-214ENST00000621814 DDR1Q08345 913 aa14.33□□□□□ -0.11
CCDC88A-214ENST00000621814 ZNF543Q08ER8 600 aa14.33□□□□□ -0.11
CCDC88A-214ENST00000621814 EZH2Q15910 746 aaKnown RBP14.33□□□□□ -0.11
CCDC88A-214ENST00000621814 MAN2A1Q16706 1144 aa14.33□□□□□ -0.11
CCDC88A-214ENST00000621814 HERC4Q5GLZ8 1057 aaPredicted RBP14.33□□□□□ -0.11
CCDC88A-214ENST00000621814 SAMD1Q6SPF0 538 aaPredicted RBP14.33□□□□□ -0.11
CCDC88A-214ENST00000621814 TXLNBQ8N3L3 684 aa14.33□□□□□ -0.11
CCDC88A-214ENST00000621814 HAS1Q92839 578 aa14.33□□□□□ -0.11
CCDC88A-214ENST00000621814 CALCOCO1Q9P1Z2 691 aa14.33□□□□□ -0.11
CCDC88A-214ENST00000621814 STK17AQ9UEE5 414 aa14.33□□□□□ -0.11
CCDC88A-214ENST00000621814 POTEB3A0JP26 581 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 POTECB2RU33 542 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 MEIS1O00470 390 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 PPEF1O14829 653 aaPredicted RBP14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 MAGEA1P43355 309 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 COASYQ13057 564 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 USH1GQ495M9 461 aa14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 PAPD7Q5XG87 772 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-214ENST00000621814 POTEBQ6S5H4 581 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms