RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 PDE4BQ07343 736 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 SMNDC1O75940 238 aaKnown RBP eCLIP5.47□□□□□ -1.531e-10■■□□□ 11.5
VPS13D-214ENST00000620676 MTHFSDQ2M296 383 aaKnown RBP5.47□□□□□ -1.53
VPS13D-214ENST00000620676 CCDC152Q4G0S7 254 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 HDAC7Q8WUI4 952 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 SH3GL1Q99961 368 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.47□□□□□ -1.53
VPS13D-214ENST00000620676 ARMT1Q9H993 441 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 STRIP2Q9ULQ0 834 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 PTPN23Q9H3S7 1636 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 TOM1O60784 492 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 ALDH1L1O75891 902 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 FAM13AO94988 1023 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 SPATA21Q7Z572 469 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 NME8Q8N427 588 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 LRRC37BQ96QE4 947 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 SMARCA4P51532 1647 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 RGS12O14924 1447 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 ATF2P15336 505 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 MMEL1Q495T6 779 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 NOSTRINQ8IVI9 506 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 TLR7Q9NYK1 1049 aaKnown RBP5.47□□□□□ -1.53
VPS13D-214ENST00000620676 TECP42680 631 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 FMR1NBQ8N0W7 255 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-214ENST00000620676 MAIP1Q8WWC4 291 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 ZMYND12Q9H0C1 365 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 R3HDM2Q9Y2K5 976 aaKnown RBP5.47□□□□□ -1.53
VPS13D-214ENST00000620676 ZBED4O75132 1171 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 MMADHCQ9H3L0 296 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-214ENST00000620676 GPCPD1Q9NPB8 672 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 FBXO2Q9UK22 296 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-214ENST00000620676 CUX1P39880 1505 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 CCDC141Q6ZP82 1450 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 RBM26Q5T8P6 1007 aaKnown RBP5.47□□□□□ -1.53
VPS13D-214ENST00000620676 WDR78Q5VTH9 848 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 ATP6V0A1Q93050 837 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 NUDT16Q96DE0 195 aaKnown RBP5.47□□□□□ -1.53
VPS13D-214ENST00000620676 RAB17Q9H0T7 212 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 ABCC5O15440 1437 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 ATP9AO75110 1047 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 FAM153BP0C7A2 387 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 IQCB1Q15051 598 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 RCN1Q15293 331 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 FAM153CQ494X1 144 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 PREPLQ4J6C6 727 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-214ENST00000620676 TEX9Q8N6V9 391 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 GABPB2Q8TAK5 448 aaPredicted RBP5.47□□□□□ -1.53
VPS13D-214ENST00000620676 FAM153AQ9UHL3 310 aa5.47□□□□□ -1.53
VPS13D-214ENST00000620676 ESRRAP11474 423 aaPredicted RBP5.46□□□□□ -1.53
VPS13D-214ENST00000620676 CLEC17AQ6ZS10 378 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 LRRC34Q8IZ02 419 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 MYCBPAPQ8TBZ2 947 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 DDX47Q9H0S4 455 aaKnown RBP5.46□□□□□ -1.53
VPS13D-214ENST00000620676 PSD3Q9NYI0 1048 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 SEPT10Q9P0V9 454 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 CPA2P48052 419 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 C10orf76Q5T2E6 689 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 SV2BQ7L1I2 683 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 TMEM60Q9H2L4 133 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 SCINQ9Y6U3 715 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 GIPC1O14908 333 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 ENO1P06733 434 aaKnown RBP5.46□□□□□ -1.53
VPS13D-214ENST00000620676 DAB2P98082 770 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 SYCP2LQ5T4T6 812 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 TRPM8Q7Z2W7 1104 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 LPIN2Q92539 896 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.46□□□□□ -1.531e-6■■□□□ 12.6
VPS13D-214ENST00000620676 KDSRQ06136 332 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 BZW1Q7L1Q6 419 aaKnown RBP5.46□□□□□ -1.53
VPS13D-214ENST00000620676 REXO1L1PQ8IX06 675 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 NUP58Q9BVL2 599 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 METTL14Q9HCE5 456 aaKnown RBP5.46□□□□□ -1.53
VPS13D-214ENST00000620676 MOSPD1Q9UJG1 213 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 FIS1Q9Y3D6 152 aa5.46□□□□□ -1.53
VPS13D-214ENST00000620676 RPRD2Q5VT52 1461 aaKnown RBP5.46□□□□□ -1.54
VPS13D-214ENST00000620676 GRM8O00222 908 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 ADCY3O60266 1144 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 SORBS3O60504 671 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 PPP1R37O75864 691 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 FGGP02679 453 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 SSTR3P32745 418 aaPredicted RBP5.46□□□□□ -1.54
VPS13D-214ENST00000620676 PGM1P36871 562 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 CARSP49589 748 aaKnown RBP5.46□□□□□ -1.54
VPS13D-214ENST00000620676 SLC25A41Q8N5S1 370 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 DGKIO75912 1065 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 TOB2Q14106 344 aaPredicted RBP5.46□□□□□ -1.54
VPS13D-214ENST00000620676 LMBR1LQ6UX01 489 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 RNF169Q8NCN4 708 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 CASKIN2Q8WXE0 1202 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 GPKOWQ92917 476 aaPredicted RBP eCLIP5.46□□□□□ -1.543e-6■■■□□ 15.3
VPS13D-214ENST00000620676 CCDC169A6NNP5 214 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 HAUS5O94927 633 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 MCF2P10911 925 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 MTM1Q13496 603 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 FCHSD1Q86WN1 690 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 ENOX1Q8TC92 643 aaKnown RBP5.46□□□□□ -1.54
VPS13D-214ENST00000620676 NR1H4Q96RI1 486 aaPredicted RBP5.46□□□□□ -1.54
VPS13D-214ENST00000620676 TSKSQ9UJT2 592 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 AP3B1O00203 1094 aa5.46□□□□□ -1.54
VPS13D-214ENST00000620676 GFPT2O94808 682 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms