RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 MOV10L1Q9BXT6 1211 aaKnown RBP16.11■□□□□ 0.17
USP39-220ENST00000613444 R3HDMLQ9H3Y0 253 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 RABGAP1Q9Y3P9 1069 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 KIAA1217Q5T5P2 1943 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 MEIS1O00470 390 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 FOXN1O15353 648 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 CYP2C8P10632 490 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 SPIRE1Q08AE8 756 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 Q3C1V9 767 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 CEP55Q53EZ4 464 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 ANKRD23Q86SG2 305 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 RASAL3Q86YV0 1011 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 CNNM3Q8NE01 707 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 LRRC15Q8TF66 581 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 DHX58Q96C10 678 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 PTPN18Q99952 460 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 PAGR1Q9BTK6 254 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 PXMP2Q9NR77 195 aa16.11■□□□□ 0.17
USP39-220ENST00000613444 POTEMA6NI47 508 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 PDHXO00330 501 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 SLFN14P0C7P3 912 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 ITGB5P18084 799 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 MRPS9P82933 396 aaKnown RBP16.1■□□□□ 0.17
USP39-220ENST00000613444 KARSQ15046 597 aaKnown RBP16.1■□□□□ 0.17
USP39-220ENST00000613444 PGM5Q15124 567 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 NAALADL2Q58DX5 795 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 PCNX4Q63HM2 1172 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 SH3RF1Q7Z6J0 888 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 SLFN12Q8IYM2 578 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 ZFP91Q96JP5 570 aaPredicted RBP16.1■□□□□ 0.17
USP39-220ENST00000613444 UIMC1Q96RL1 719 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 RMDN3Q96TC7 470 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 KIAA1468Q9P260 1216 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 PCDHA12Q9UN75 941 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 TESPA1A2RU30 521 aaPredicted RBP16.1■□□□□ 0.17
USP39-220ENST00000613444 ZNF76P36508 570 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 TMEM266Q2M3C6 531 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 PDXDC2PQ6P474 469 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.1■□□□□ 0.17
USP39-220ENST00000613444 FAM43AQ8N2R8 423 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 FAM20AQ96MK3 541 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 PDCD2LQ9BRP1 358 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 TSPY26PQ9H489 355 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 DISC1Q9NRI5 854 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 PNMA3Q9UL41 463 aa16.1■□□□□ 0.17
USP39-220ENST00000613444 EIF2AK2P19525 551 aaKnown RBP16.09■□□□□ 0.17
USP39-220ENST00000613444 UBA7P41226 1012 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 TYRO3Q06418 890 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 CABP7Q86V35 215 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 MXRA8Q9BRK3 442 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 RBSNQ9H1K0 784 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 LRWD1Q9UFC0 647 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 FBXO40Q9UH90 709 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 USP25Q9UHP3 1055 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 UBIAD1Q9Y5Z9 338 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 GOLGA6L3A6NEY3 463 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 TXLNAP40222 546 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 PNOCQ13519 176 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 PLA2G4DQ86XP0 818 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 IQUBQ8NA54 791 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 MTRQ99707 1265 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 NUDT12Q9BQG2 462 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 TUBE1Q9UJT0 475 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 VAV3Q9UKW4 847 aa16.09■□□□□ 0.17
USP39-220ENST00000613444 ASTN1O14525 1302 aa16.08■□□□□ 0.17
USP39-220ENST00000613444 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.08■□□□□ 0.16
USP39-220ENST00000613444 PRR29P0C7W0 189 aa16.08■□□□□ 0.16
USP39-220ENST00000613444 CCDC192P0DO97 292 aa16.08■□□□□ 0.16
USP39-220ENST00000613444 ARP10275 920 aa16.08■□□□□ 0.16
USP39-220ENST00000613444 BCRP11274 1271 aa16.08■□□□□ 0.16
USP39-220ENST00000613444 ERCC3P19447 782 aa16.08■□□□□ 0.16
USP39-220ENST00000613444 ZNF157P51786 506 aaPredicted RBP16.08■□□□□ 0.16
USP39-220ENST00000613444 NIPA1Q7RTP0 329 aa16.08■□□□□ 0.16
USP39-220ENST00000613444 GRAMD1CQ8IYS0 662 aa16.08■□□□□ 0.16
USP39-220ENST00000613444 SLC5A5Q92911 643 aa16.08■□□□□ 0.16
USP39-220ENST00000613444 PYM1Q9BRP8 204 aaKnown RBP16.08■□□□□ 0.16
USP39-220ENST00000613444 RAB34Q9BZG1 259 aa16.08■□□□□ 0.16
USP39-220ENST00000613444 SLC25A27O95847 323 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 ERVK-9P63128 1117 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 ERVK-24P63145 666 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 SETQ01105 290 aaPredicted RBP16.07■□□□□ 0.16
USP39-220ENST00000613444 POSTNQ15063 836 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 ARHGEF16Q5VV41 709 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 RGMBQ6NW40 437 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 VSIG10LQ86VR7 867 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 NCAPG2Q86XI2 1143 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 SMC1BQ8NDV3 1235 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 GTF3C2Q8WUA4 911 aaPredicted RBP16.07■□□□□ 0.16
USP39-220ENST00000613444 PAGE5Q96GU1 130 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 TLL2Q9Y6L7 1015 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 PFASO15067 1338 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 LRRC37A2A6NM11 1700 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 A0A087WWV3 80 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 MARCH6O60337 910 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 PSMD10O75832 226 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 PLCG1P19174 1290 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 GRB10Q13322 594 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 KANK3Q6NY19 840 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 SPATA20Q8TB22 786 aa16.07■□□□□ 0.16
USP39-220ENST00000613444 PNMA5Q96PV4 448 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms