RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ARRDC4Q8NCT1 418 aa22.41■■□□□ 1.18
SHKBP1-221ENST00000599833 COPS5Q92905 334 aa22.41■■□□□ 1.18
SHKBP1-221ENST00000599833 CUL5Q93034 780 aa22.41■■□□□ 1.18
SHKBP1-221ENST00000599833 PHF24Q9UPV7 400 aa22.41■■□□□ 1.18
SHKBP1-221ENST00000599833 Q9Y3F1 56 aa22.41■■□□□ 1.18
SHKBP1-221ENST00000599833 DOCK5Q9H7D0 1870 aa22.41■■□□□ 1.18
SHKBP1-221ENST00000599833 B4DLN1 442 aa22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 ADCY7P51828 1080 aa22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 MRPL12P52815 198 aaKnown RBP22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 SSRP1Q08945 709 aaKnown RBP22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 RABEP1Q15276 862 aa22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 NSUN7Q8NE18 718 aaKnown RBP22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 SCFD2Q8WU76 684 aa22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 CRYGNQ8WXF5 182 aa22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 INPP4AQ96PE3 977 aaPredicted RBP22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 MPHOSPH6Q99547 160 aaKnown RBP22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 TMEM260Q9NX78 707 aa22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 VPS54Q9P1Q0 977 aa22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 PCDHA6Q9UN73 950 aa22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 LIMCH1Q9UPQ0 1083 aa22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 PCDHA8Q9Y5H6 950 aa22.4■■□□□ 1.18
SHKBP1-221ENST00000599833 EDIL3O43854 480 aa22.39■■□□□ 1.17
SHKBP1-221ENST00000599833 DEXIO95424 95 aa22.39■■□□□ 1.17
SHKBP1-221ENST00000599833 PCNX4Q63HM2 1172 aa22.39■■□□□ 1.17
SHKBP1-221ENST00000599833 PGBD1Q96JS3 809 aa22.39■■□□□ 1.17
SHKBP1-221ENST00000599833 DDX41Q9UJV9 622 aaKnown RBP22.39■■□□□ 1.17
SHKBP1-221ENST00000599833 M0R2N6 131 aa22.38■■□□□ 1.17
SHKBP1-221ENST00000599833 CPLX1O14810 134 aa22.38■■□□□ 1.17
SHKBP1-221ENST00000599833 MYCLP12524 364 aaPredicted RBP22.38■■□□□ 1.17
SHKBP1-221ENST00000599833 CCND2P30279 289 aa22.38■■□□□ 1.17
SHKBP1-221ENST00000599833 ICAM3P32942 547 aa22.38■■□□□ 1.17
SHKBP1-221ENST00000599833 BEX3Q00994 111 aa22.38■■□□□ 1.17
SHKBP1-221ENST00000599833 ARHGAP1Q07960 439 aa22.38■■□□□ 1.17
SHKBP1-221ENST00000599833 SNX17Q15036 470 aa22.38■■□□□ 1.17
SHKBP1-221ENST00000599833 SEPT14Q6ZU15 432 aa22.38■■□□□ 1.17
SHKBP1-221ENST00000599833 RNF180Q86T96 592 aa22.38■■□□□ 1.17
SHKBP1-221ENST00000599833 TSEN34Q9BSV6 310 aaKnown RBP22.38■■□□□ 1.17
SHKBP1-221ENST00000599833 SH3GLB2Q9NR46 395 aa22.38■■□□□ 1.17
SHKBP1-221ENST00000599833 DYNC1LI2O43237 492 aaPredicted RBP22.37■■□□□ 1.17
SHKBP1-221ENST00000599833 JAK2O60674 1132 aa22.37■■□□□ 1.17
SHKBP1-221ENST00000599833 SP2Q02086 613 aa22.37■■□□□ 1.17
SHKBP1-221ENST00000599833 KCNA10Q16322 511 aa22.37■■□□□ 1.17
SHKBP1-221ENST00000599833 LY6KQ17RY6 165 aa22.37■■□□□ 1.17
SHKBP1-221ENST00000599833 LRRC26Q2I0M4 334 aa22.37■■□□□ 1.17
SHKBP1-221ENST00000599833 TRIM22Q8IYM9 498 aa22.37■■□□□ 1.17
SHKBP1-221ENST00000599833 SENP6Q9GZR1 1112 aaPredicted RBP22.37■■□□□ 1.17
SHKBP1-221ENST00000599833 BCAS3Q9H6U6 928 aa22.37■■□□□ 1.17
SHKBP1-221ENST00000599833 SCN10AQ9Y5Y9 1956 aa22.37■■□□□ 1.17
SHKBP1-221ENST00000599833 A0A1W2PQ45 241 aaPredicted RBP22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 A0A1W2PQY0 241 aa22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 KBTBD13C9JR72 458 aa22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 NKRFO15226 690 aaKnown RBP eCLIP22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 C6orf222P0C671 652 aaPredicted RBP22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 TXNP10599 105 aaKnown RBP22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 ITGB5P18084 799 aa22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 ACLYP53396 1101 aa22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 AKAP17AQ02040 695 aaKnown RBP22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 TTLL4Q14679 1199 aa22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 XRRA1Q6P2D8 792 aa22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 ANO3Q9BYT9 981 aa22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 UPF2Q9HAU5 1272 aaKnown RBP22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 GJB4Q9NTQ9 266 aa22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 UBIAD1Q9Y5Z9 338 aa22.36■■□□□ 1.17
SHKBP1-221ENST00000599833 SPATA31C2B4DYI2 1134 aa22.35■■□□□ 1.17
SHKBP1-221ENST00000599833 STAM2O75886 525 aa22.35■■□□□ 1.17
SHKBP1-221ENST00000599833 CDKL5O76039 1030 aa22.35■■□□□ 1.17
SHKBP1-221ENST00000599833 SREBF1P36956 1147 aa22.35■■□□□ 1.17
SHKBP1-221ENST00000599833 AP3B2Q13367 1082 aa22.35■■□□□ 1.17
SHKBP1-221ENST00000599833 FSCN1Q16658 493 aaKnown RBP22.35■■□□□ 1.17
SHKBP1-221ENST00000599833 CPLX2Q6PUV4 134 aaKnown RBP22.35■■□□□ 1.17
SHKBP1-221ENST00000599833 RASGRP4Q8TDF6 673 aa22.35■■□□□ 1.17
SHKBP1-221ENST00000599833 EMID1Q96A84 441 aaPredicted RBP22.35■■□□□ 1.17
SHKBP1-221ENST00000599833 GLT8D2Q9H1C3 349 aa22.35■■□□□ 1.17
SHKBP1-221ENST00000599833 MOXD2PA6NHM9 499 aa22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 A6NJR5 290 aa22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 SPDYE3A6NKU9 549 aa22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 FOSP01100 380 aaPredicted RBP22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 ASGR1P07306 291 aa22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 UBA1P22314 1058 aaKnown RBP22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 C1orf53Q5VUE5 145 aa22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 JAKMIP3Q5VZ66 844 aa22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 DAGLBQ8NCG7 672 aa22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 CCDC148Q8NFR7 591 aa22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 OR6J1Q8NGC5 347 aa22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 CCDC12Q8WUD4 166 aaPredicted RBP22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 FERMT2Q96AC1 680 aa22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 PHF20Q9BVI0 1012 aa22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 C6orf50Q9HD87 102 aa22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 RTEL1Q9NZ71 1219 aa22.34■■□□□ 1.17
SHKBP1-221ENST00000599833 GRIN2DO15399 1336 aa22.33■■□□□ 1.17
SHKBP1-221ENST00000599833 LAMA2P24043 3122 aaKnown RBP22.33■■□□□ 1.17
SHKBP1-221ENST00000599833 MYCNP04198 464 aaPredicted RBP22.33■■□□□ 1.17
SHKBP1-221ENST00000599833 GNASQ5JWF2 1037 aa22.33■■□□□ 1.17
SHKBP1-221ENST00000599833 SLC39A5Q6ZMH5 540 aa22.33■■□□□ 1.17
SHKBP1-221ENST00000599833 CCDC83Q8IWF9 413 aa22.33■■□□□ 1.17
SHKBP1-221ENST00000599833 FAM177A1Q8N128 213 aaPredicted RBP22.33■■□□□ 1.17
SHKBP1-221ENST00000599833 ORC3Q9UBD5 711 aaPredicted RBP22.33■■□□□ 1.17
SHKBP1-221ENST00000599833 MRVI1Q9Y6F6 885 aa22.33■■□□□ 1.17
SHKBP1-221ENST00000599833 TGFB3P10600 412 aa22.32■■□□□ 1.16
SHKBP1-221ENST00000599833 GNA11P29992 359 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms