RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 GPHNQ9NQX3 736 aaPredicted RBP10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 ANAPC4Q9UJX5 808 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 Q9Y3F1 56 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 PCDHA11Q9Y5I1 949 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 MTCH2Q9Y6C9 303 aa10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 COL4A4P53420 1690 aaPredicted RBP10.18□□□□□ -0.78
SHKBP1-220ENST00000599716 NEDD4P46934 1319 aa10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 USP24Q9UPU5 2620 aa10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 RBM47A0AV96 593 aaKnown RBP10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 IQCF3P0C7M6 154 aa10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 TXNP10599 105 aaKnown RBP10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 HSPD1P10809 573 aaKnown RBP10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 POU3F3P20264 500 aaPredicted RBP10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 CPT1AP50416 773 aa10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 TAP1Q03518 808 aa10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 ZNF543Q08ER8 600 aa10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 LY6KQ17RY6 165 aa10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 CTAGE1Q96RT6 745 aa10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 CRBNQ96SW2 442 aa10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 POLR3EQ9NVU0 708 aa10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 COL20A1Q9P218 1284 aa10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 ADD3Q9UEY8 706 aaKnown RBP10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 MTUS1Q9ULD2 1270 aa10.17□□□□□ -0.78
SHKBP1-220ENST00000599716 EP300Q09472 2414 aaPredicted RBP10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 GTPBP6O43824 516 aaPredicted RBP10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 FGRP09769 529 aa10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 PDE1AP54750 535 aa10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 DEFB103AP81534 67 aa10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 GPNMBQ14956 572 aa10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 GDF6Q6KF10 455 aaPredicted RBP10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 FAM117BQ6P1L5 589 aa10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 SEPT14Q6ZU15 432 aa10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 AFG1LQ8WV93 481 aa10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 DHX38Q92620 1227 aaKnown RBP10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 COL26A1Q96A83 441 aa10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 ZFP91Q96JP5 570 aaPredicted RBP10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 MFSD14AQ96MC6 490 aa10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 TAAR1Q96RJ0 339 aa10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 NOD1Q9Y239 953 aa10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 SPTBN2O15020 2390 aa10.16□□□□□ -0.78
SHKBP1-220ENST00000599716 A6NJR5 290 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 DCXO43602 365 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 SUPT20HL2P0C7V6 817 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 EDNRBP24530 442 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 ZNF200P98182 395 aaPredicted RBP10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 GRB10Q13322 594 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 ALX1Q15699 326 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 PTGISQ16647 500 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 MCMDC2Q4G0Z9 681 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 PPP4R3BQ5MIZ7 849 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 HERC6Q8IVU3 1022 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 RETREG2Q8NC44 543 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 GDPD5Q8WTR4 605 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 SCFD2Q8WU76 684 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 KAT2BQ92831 832 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 WNT8BQ93098 351 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 RILPL2Q969X0 211 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 EVI5LQ96CN4 794 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 LNPKQ9C0E8 428 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 HELLSQ9NRZ9 838 aa10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 MAP1BP46821 2468 aaKnown RBP10.15□□□□□ -0.78
SHKBP1-220ENST00000599716 CEP250Q9BV73 2442 aa10.15□□□□□ -0.79
SHKBP1-220ENST00000599716 ZFYVE26Q68DK2 2539 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 MYH6P13533 1939 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 TRIM6-TRIM34B2RNG4 842 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 LPXNO60711 386 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 MMP3P08254 477 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 ZNF286BP0CG31 522 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 SNHG28P0DPA3 235 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 EIF2AK2P19525 551 aaKnown RBP10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 ARHGAP1Q07960 439 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 HIC1Q14526 733 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 CDC37Q16543 378 aaPredicted RBP10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 B4GALNT3Q6L9W6 998 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 HFE2Q6ZVN8 426 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 FAM178BQ8IXR5 827 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 PRSS33Q8NF86 280 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 SYTL5Q8TDW5 730 aaPredicted RBP10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 PRRX2Q99811 253 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 ALG1Q9BT22 464 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 VAT1LQ9HCJ6 419 aa10.14□□□□□ -0.79
SHKBP1-220ENST00000599716 MYH7BA7E2Y1 1941 aa10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 KIAA1217Q5T5P2 1943 aa10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 CCDC171Q6TFL3 1326 aa10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 NBNO60934 754 aa10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 PFKMP08237 780 aa10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 ACTN1P12814 892 aa10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 SSTR3P32745 418 aaPredicted RBP10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 WDR5P61964 334 aaKnown RBP10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 NFRKBQ6P4R8 1299 aa10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 CCDC62Q6P9F0 684 aa10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 MFSD6Q6ZSS7 791 aa10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 ADGRF4Q8IZF3 695 aa10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 SLC9A7Q96T83 725 aa10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 TCP11L1Q9NUJ3 509 aa10.13□□□□□ -0.79
SHKBP1-220ENST00000599716 WDR19Q8NEZ3 1342 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 RAD50Q92878 1312 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 POTEB3A0JP26 581 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 B4E1Z4 1266 aa10.12□□□□□ -0.79
SHKBP1-220ENST00000599716 PITPNM1O00562 1244 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms