RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 FBXO16Q8IX29 292 aaPredicted RBP12.11□□□□□ -0.47
LIG1-210ENST00000596332 CCDC148Q8NFR7 591 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 CCDC12Q8WUD4 166 aaPredicted RBP12.11□□□□□ -0.47
LIG1-210ENST00000596332 WASF1Q92558 559 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 LENG9Q96B70 501 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 INPP4AQ96PE3 977 aaPredicted RBP12.11□□□□□ -0.47
LIG1-210ENST00000596332 ABHD16BQ9H3Z7 469 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 TSHZ2Q9NRE2 1034 aa12.11□□□□□ -0.47
LIG1-210ENST00000596332 GNEQ9Y223 722 aaKnown RBP12.11□□□□□ -0.47
LIG1-210ENST00000596332 MCM3APO60318 1980 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 FAM86B1E9PN63 330 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 MEIS1O00470 390 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 EIF3JO75822 258 aaKnown RBP12.1□□□□□ -0.47
LIG1-210ENST00000596332 FOSP01100 380 aaPredicted RBP12.1□□□□□ -0.47
LIG1-210ENST00000596332 FAM86B2P0C5J1 330 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 SMPD1P17405 629 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 U2AF2P26368 475 aaKnown RBP eCLIP12.1□□□□□ -0.47
LIG1-210ENST00000596332 CIITAP33076 1130 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 ADCYAP1R1P41586 468 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 NKX3-2P78367 333 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 STXBP2Q15833 593 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 CCDC144BQ3MJ40 725 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 GJC2Q5T442 439 aaPredicted RBP12.1□□□□□ -0.47
LIG1-210ENST00000596332 DIS3L2Q8IYB7 885 aaKnown RBP12.1□□□□□ -0.47
LIG1-210ENST00000596332 REXO1Q8N1G1 1221 aaKnown RBP12.1□□□□□ -0.47
LIG1-210ENST00000596332 LENG1Q96BZ8 264 aaPredicted RBP12.1□□□□□ -0.47
LIG1-210ENST00000596332 ABHD8Q96I13 439 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 C8orf76Q96K31 380 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 MBOAT7Q96N66 472 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 CRISPLD2Q9H0B8 497 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 GLT8D2Q9H1C3 349 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 VTA1Q9NP79 307 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 TELO2Q9Y4R8 837 aa12.1□□□□□ -0.47
LIG1-210ENST00000596332 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.1□□□□□ -0.47
LIG1-210ENST00000596332 CYP3A7-CYP3A51PA0A087WV96 503 aa12.09□□□□□ -0.47
LIG1-210ENST00000596332 SPATA31C2B4DYI2 1134 aa12.09□□□□□ -0.47
LIG1-210ENST00000596332 SEPT4O43236 478 aa12.09□□□□□ -0.47
LIG1-210ENST00000596332 ATP9AO75110 1047 aa12.09□□□□□ -0.47
LIG1-210ENST00000596332 MYCP01106 439 aaPredicted RBP12.09□□□□□ -0.47
LIG1-210ENST00000596332 CYP3A7P24462 503 aa12.09□□□□□ -0.47
LIG1-210ENST00000596332 ICAM3P32942 547 aa12.09□□□□□ -0.47
LIG1-210ENST00000596332 DDIT3P35638 169 aa12.09□□□□□ -0.47
LIG1-210ENST00000596332 ARHGAP4P98171 946 aa12.09□□□□□ -0.47
LIG1-210ENST00000596332 COPS5Q92905 334 aa12.09□□□□□ -0.47
LIG1-210ENST00000596332 WDR11Q9BZH6 1224 aa12.09□□□□□ -0.47
LIG1-210ENST00000596332 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.09□□□□□ -0.47
LIG1-210ENST00000596332 RTEL1Q9NZ71 1219 aa12.09□□□□□ -0.47
LIG1-210ENST00000596332 DDX41Q9UJV9 622 aaKnown RBP12.09□□□□□ -0.47
LIG1-210ENST00000596332 SMC3Q9UQE7 1217 aa12.09□□□□□ -0.47
LIG1-210ENST00000596332 SPDYE3A6NKU9 549 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 ADAMTS4O75173 837 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 GJB1P08034 283 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 ARP10275 920 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 MYCLP12524 364 aaPredicted RBP12.08□□□□□ -0.48
LIG1-210ENST00000596332 SYT1P21579 422 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 TOB1P50616 345 aaPredicted RBP12.08□□□□□ -0.48
LIG1-210ENST00000596332 PDE4DQ08499 809 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 LY6KQ17RY6 165 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 ANO1Q5XXA6 986 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 LARP1BQ659C4 914 aaKnown RBP12.08□□□□□ -0.48
LIG1-210ENST00000596332 IQSEC1Q6DN90 963 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 CCSAPQ6IQ19 270 aaPredicted RBP12.08□□□□□ -0.48
LIG1-210ENST00000596332 XRRA1Q6P2D8 792 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 HSCBQ8IWL3 235 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 BICD2Q8TD16 824 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 TBCKQ8TEA7 893 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 MXRA8Q9BRK3 442 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 HMX1Q9NP08 348 aaPredicted RBP12.08□□□□□ -0.48
LIG1-210ENST00000596332 JADE2Q9NQC1 790 aa12.08□□□□□ -0.48
LIG1-210ENST00000596332 MYADML2A6NDP7 307 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 DHX15O43143 795 aaKnown RBP12.07□□□□□ -0.48
LIG1-210ENST00000596332 SGPL1O95470 568 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 MYCNP04198 464 aaPredicted RBP12.07□□□□□ -0.48
LIG1-210ENST00000596332 CCND2P30279 289 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 KRT2P35908 639 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 USP11P51784 963 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 ARHGAP1Q07960 439 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 PKP1Q13835 747 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 INF2Q27J81 1249 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 DUSP28Q4G0W2 176 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 MCTP2Q6DN12 878 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 SEPT14Q6ZU15 432 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 PIK3AP1Q6ZUJ8 805 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 KRT25Q7Z3Z0 450 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 UBE2Q1Q7Z7E8 422 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 FAM184AQ8NB25 1140 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 SPRYD3Q8NCJ5 442 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 KLHDC9Q8NEP7 349 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 DEFB118Q96PH6 123 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 RNF208Q9H0X6 261 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 UPF3AQ9H1J1 476 aaKnown RBP12.07□□□□□ -0.48
LIG1-210ENST00000596332 FOXP1Q9H334 677 aaPredicted RBP12.07□□□□□ -0.48
LIG1-210ENST00000596332 DDX20Q9UHI6 824 aaKnown RBP12.07□□□□□ -0.48
LIG1-210ENST00000596332 ZHX1Q9UKY1 873 aaPredicted RBP12.07□□□□□ -0.48
LIG1-210ENST00000596332 OGDHLQ9ULD0 1010 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 FAM184BQ9ULE4 1060 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 MTMR6Q9Y217 621 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 CNPY2Q9Y2B0 182 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 ZDHHC9Q9Y397 364 aa12.07□□□□□ -0.48
LIG1-210ENST00000596332 STAM2O75886 525 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms